Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRDM16-DT (PRDM16 divergent transcript)

Identity

Alias_namesLINC00982
long intergenic non-protein coding RNA 982
Alias_symbol (synonym)FLJ42875
lnc-dPrdm16
Other alias
HGNC (Hugo) PRDM16-DT
LocusID (NCBI) 440556
Atlas_Id 56884
Location 1p36.32  [Link to chromosome band 1p36]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PRDM16-DT   48664
Cards
Entrez_Gene (NCBI)PRDM16-DT  440556  PRDM16 divergent transcript
AliasesLINC00982; lnc-dPrdm16
GeneCards (Weizmann)PRDM16-DT
Ensembl hg19 (Hinxton)ENSG00000177133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177133 [Gene_View]  ENSG00000177133 [Sequence]  - [Contig_View]  PRDM16-DT [Vega]
ICGC DataPortalENSG00000177133
TCGA cBioPortalPRDM16-DT
AceView (NCBI)PRDM16-DT
Genatlas (Paris)PRDM16-DT
WikiGenes440556
SOURCE (Princeton)PRDM16-DT
Genetics Home Reference (NIH)PRDM16-DT
Genomic and cartography
GoldenPath hg38 (UCSC)PRDM16-DT  -  
GoldenPath hg19 (UCSC)PRDM16-DT  -  
GoldenPathPRDM16-DT - [CytoView hg19]  PRDM16-DT - [CytoView hg38]
ImmunoBaseENSG00000177133
Mapping of homologs : NCBIPRDM16-DT [Mapview hg19]  PRDM16-DT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124865 AL713743 AL832943 AL833006 BC029785
RefSeq transcript (Entrez)NM_001004337 NM_198543
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRDM16-DT
Cluster EST : UnigeneHs.531041 [ NCBI ]
CGAP (NCI)Hs.531041
Alternative Splicing GalleryENSG00000177133
Gene ExpressionPRDM16-DT [ NCBI-GEO ]   PRDM16-DT [ EBI - ARRAY_EXPRESS ]   PRDM16-DT [ SEEK ]   PRDM16-DT [ MEM ]
Gene Expression Viewer (FireBrowse)PRDM16-DT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440556
GTEX Portal (Tissue expression)PRDM16-DT
Human Protein AtlasENSG00000177133-PRDM16-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRDM16-DT
DMDM Disease mutations440556
Blocks (Seattle)PRDM16-DT
Human Protein Atlas [tissue]ENSG00000177133-PRDM16-DT [tissue]
Protein Interaction databases
FunCoupENSG00000177133
BioGRIDPRDM16-DT
STRING (EMBL)PRDM16-DT
ZODIACPRDM16-DT
Ontologies - Pathways
Huge Navigator PRDM16-DT [HugePedia]
snp3D : Map Gene to Disease440556
BioCentury BCIQPRDM16-DT
ClinGenPRDM16-DT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440556
Clinical trialPRDM16-DT
Miscellaneous
canSAR (ICR)PRDM16-DT (select the gene name)
DataMed IndexPRDM16-DT
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRDM16-DT
EVEXPRDM16-DT
GoPubMedPRDM16-DT
iHOPPRDM16-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:02:25 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.