Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRSS41 (serine protease 41)

Identity

Alias_namesprotease, serine 41
Alias_symbol (synonym)TESSP1
Other alias
HGNC (Hugo) PRSS41
LocusID (NCBI) 360226
Atlas_Id 50722
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2789525 and ends at 2805286 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRSS41   30715
Cards
Entrez_Gene (NCBI)PRSS41  360226  serine protease 41
AliasesTESSP1
GeneCards (Weizmann)PRSS41
Ensembl hg19 (Hinxton)ENSG00000215148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215148 [Gene_View]  ENSG00000215148 [Sequence]  chr16:2789525-2805286 [Contig_View]  PRSS41 [Vega]
ICGC DataPortalENSG00000215148
TCGA cBioPortalPRSS41
AceView (NCBI)PRSS41
Genatlas (Paris)PRSS41
WikiGenes360226
SOURCE (Princeton)PRSS41
Genetics Home Reference (NIH)PRSS41
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS41  -     chr16:2789525-2805286 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS41  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathPRSS41 - 16p13.3 [CytoView hg19]  PRSS41 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000215148
Mapping of homologs : NCBIPRSS41 [Mapview hg19]  PRSS41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BN000124
RefSeq transcript (Entrez)NM_001135086 NM_001354586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS41
Cluster EST : UnigeneHs.647401 [ NCBI ]
CGAP (NCI)Hs.647401
Alternative Splicing GalleryENSG00000215148
Gene ExpressionPRSS41 [ NCBI-GEO ]   PRSS41 [ EBI - ARRAY_EXPRESS ]   PRSS41 [ SEEK ]   PRSS41 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)360226
GTEX Portal (Tissue expression)PRSS41
Human Protein AtlasENSG00000215148-PRSS41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTY9
Splice isoforms : SwissVarQ7RTY9
PhosPhoSitePlusQ7RTY9
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS41
DMDM Disease mutations360226
Blocks (Seattle)PRSS41
SuperfamilyQ7RTY9
Human Protein Atlas [tissue]ENSG00000215148-PRSS41 [tissue]
Peptide AtlasQ7RTY9
HPRD15488
IPIIPI00373824   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTY9
IntAct (EBI)Q7RTY9
FunCoupENSG00000215148
BioGRIDPRSS41
STRING (EMBL)PRSS41
ZODIACPRSS41
Ontologies - Pathways
QuickGOQ7RTY9
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  plasma membrane  plasma membrane  proteolysis  anchored component of membrane  intracellular organelle  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  plasma membrane  plasma membrane  proteolysis  anchored component of membrane  intracellular organelle  
NDEx NetworkPRSS41
Atlas of Cancer Signalling NetworkPRSS41
Wikipedia pathwaysPRSS41
Orthology - Evolution
OrthoDB360226
GeneTree (enSembl)ENSG00000215148
Phylogenetic Trees/Animal Genes : TreeFamPRSS41
HOGENOMQ7RTY9
Homologs : HomoloGenePRSS41
Homology/Alignments : Family Browser (UCSC)PRSS41
Gene fusions - Rearrangements
Fusion : QuiverPRSS41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS41
dbVarPRSS41
ClinVarPRSS41
1000_GenomesPRSS41 
Exome Variant ServerPRSS41
ExAC (Exome Aggregation Consortium)ENSG00000215148
GNOMAD BrowserENSG00000215148
Varsome BrowserPRSS41
Genetic variants : HAPMAP360226
Genomic Variants (DGV)PRSS41 [DGVbeta]
DECIPHERPRSS41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS41 
Mutations
ICGC Data PortalPRSS41 
TCGA Data PortalPRSS41 
Broad Tumor PortalPRSS41
OASIS PortalPRSS41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRSS41  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPRSS41
Mutations and Diseases : HGMDPRSS41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRSS41
DgiDB (Drug Gene Interaction Database)PRSS41
DoCM (Curated mutations)PRSS41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS41 (select a term)
intoGenPRSS41
Cancer3DPRSS41(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRSS41
MedgenPRSS41
Genetic Testing Registry PRSS41
NextProtQ7RTY9 [Medical]
TSGene360226
GENETestsPRSS41
Target ValidationPRSS41
Huge Navigator PRSS41 [HugePedia]
snp3D : Map Gene to Disease360226
BioCentury BCIQPRSS41
ClinGenPRSS41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD360226
Chemical/Pharm GKB GenePA165450634
Clinical trialPRSS41
Miscellaneous
canSAR (ICR)PRSS41 (select the gene name)
DataMed IndexPRSS41
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS41
EVEXPRSS41
GoPubMedPRSS41
iHOPPRSS41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:02:52 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.