Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PTPRVP (protein tyrosine phosphatase receptor type V, pseudogene)

Identity

Alias_namesPTPRV
Alias_symbol (synonym)OST-PTP
ESP
Other alias
HGNC (Hugo) PTPRVP
LocusID (NCBI) 148713
Atlas_Id 56378
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 202168051 and ends at 202189449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTPRVP (1q32.1) / MBP (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PTPRVP   13421
Cards
Entrez_Gene (NCBI)PTPRVP  148713  protein tyrosine phosphatase receptor type V, pseudogene
AliasesESP; OST-PTP; PTPRV
GeneCards (Weizmann)PTPRVP
Ensembl hg19 (Hinxton)ENSG00000243323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243323 [Gene_View]  ENSG00000243323 [Sequence]  chr1:202168051-202189449 [Contig_View]  PTPRVP [Vega]
ICGC DataPortalENSG00000243323
TCGA cBioPortalPTPRVP
AceView (NCBI)PTPRVP
Genatlas (Paris)PTPRVP
WikiGenes148713
SOURCE (Princeton)PTPRVP
Genetics Home Reference (NIH)PTPRVP
Genomic and cartography
GoldenPath hg38 (UCSC)PTPRVP  -     chr1:202168051-202189449 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTPRVP  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathPTPRVP - 1q32.1 [CytoView hg19]  PTPRVP - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000243323
Mapping of homologs : NCBIPTPRVP [Mapview hg19]  PTPRVP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ629456 AY819761 AY819762 AY819763
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTPRVP
Cluster EST : UnigeneHs.523870 [ NCBI ]
CGAP (NCI)Hs.523870
Alternative Splicing GalleryENSG00000243323
Gene ExpressionPTPRVP [ NCBI-GEO ]   PTPRVP [ EBI - ARRAY_EXPRESS ]   PTPRVP [ SEEK ]   PTPRVP [ MEM ]
Gene Expression Viewer (FireBrowse)PTPRVP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)148713
GTEX Portal (Tissue expression)PTPRVP
Human Protein AtlasENSG00000243323-PTPRVP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTPRVP
DMDM Disease mutations148713
Blocks (Seattle)PTPRVP
Human Protein Atlas [tissue]ENSG00000243323-PTPRVP [tissue]
IPIIPI00977283   
Protein Interaction databases
FunCoupENSG00000243323
BioGRIDPTPRVP
STRING (EMBL)PTPRVP
ZODIACPTPRVP
Ontologies - Pathways
Huge Navigator PTPRVP [HugePedia]
snp3D : Map Gene to Disease148713
BioCentury BCIQPTPRVP
ClinGenPTPRVP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148713
Chemical/Pharm GKB GenePA134935370
Clinical trialPTPRVP
Miscellaneous
canSAR (ICR)PTPRVP (select the gene name)
DataMed IndexPTPRVP
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTPRVP
EVEXPTPRVP
GoPubMedPTPRVP
iHOPPTPRVP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:03:24 CET 2019
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