Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RANBP10 (RAN binding protein 10)

Identity

Alias_symbol (synonym)KIAA1464
Other alias-
HGNC (Hugo) RANBP10
LocusID (NCBI) 57610
Atlas_Id 72481
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67723066 and ends at 67806652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RANBP10 (16q22.1) / BPIFA1 (20q11.21)RANBP10 (16q22.1) / RRP15 (1q41)RANBP10 (16q22.1) / SLC12A4 (16q22.1)
RANBP10 (16q22.1) / SLC7A6 (16q22.1)RANBP10 SLC12A4RANBP10 RRP15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RANBP10   29285
Cards
Entrez_Gene (NCBI)RANBP10  57610  RAN binding protein 10
Aliases
GeneCards (Weizmann)RANBP10
Ensembl hg19 (Hinxton)ENSG00000141084 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141084 [Gene_View]  ENSG00000141084 [Sequence]  chr16:67723066-67806652 [Contig_View]  RANBP10 [Vega]
ICGC DataPortalENSG00000141084
TCGA cBioPortalRANBP10
AceView (NCBI)RANBP10
Genatlas (Paris)RANBP10
WikiGenes57610
SOURCE (Princeton)RANBP10
Genetics Home Reference (NIH)RANBP10
Genomic and cartography
GoldenPath hg38 (UCSC)RANBP10  -     chr16:67723066-67806652 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RANBP10  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathRANBP10 - 16q22.1 [CytoView hg19]  RANBP10 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000141084
Mapping of homologs : NCBIRANBP10 [Mapview hg19]  RANBP10 [Mapview hg38]
OMIM614031   
Gene and transcription
Genbank (Entrez)AB040897 AI275875 AK000686 AK055634 AK055727
RefSeq transcript (Entrez)NM_001320238 NM_001320239 NM_001320240 NM_020850
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RANBP10
Cluster EST : UnigeneHs.368569 [ NCBI ]
CGAP (NCI)Hs.368569
Alternative Splicing GalleryENSG00000141084
Gene ExpressionRANBP10 [ NCBI-GEO ]   RANBP10 [ EBI - ARRAY_EXPRESS ]   RANBP10 [ SEEK ]   RANBP10 [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57610
GTEX Portal (Tissue expression)RANBP10
Human Protein AtlasENSG00000141084-RANBP10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6VN20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6VN20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6VN20
Splice isoforms : SwissVarQ6VN20
PhosPhoSitePlusQ6VN20
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    CTLH (PS50897)    LISH (PS50896)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom_sf    CRA_dom    CTLH/CRA    CTLH_C    LisH    SPRY_dom    SPRY_RanBP9/10   
Domain families : Pfam (Sanger)CLTH (PF10607)    LisH (PF08513)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam10607    pfam08513    pfam00622   
Domain families : Smart (EMBL)CRA (SM00757)  CTLH (SM00668)  SPRY (SM00449)  
Conserved Domain (NCBI)RANBP10
DMDM Disease mutations57610
Blocks (Seattle)RANBP10
SuperfamilyQ6VN20
Human Protein Atlas [tissue]ENSG00000141084-RANBP10 [tissue]
Peptide AtlasQ6VN20
HPRD15207
IPIIPI00039864   IPI01014098   IPI00910278   IPI00910228   IPI00908314   
Protein Interaction databases
DIP (DOE-UCLA)Q6VN20
IntAct (EBI)Q6VN20
FunCoupENSG00000141084
BioGRIDRANBP10
STRING (EMBL)RANBP10
ZODIACRANBP10
Ontologies - Pathways
QuickGOQ6VN20
Ontology : AmiGOubiquitin ligase complex  protein binding  nucleus  cytosol  
Ontology : EGO-EBIubiquitin ligase complex  protein binding  nucleus  cytosol  
NDEx NetworkRANBP10
Atlas of Cancer Signalling NetworkRANBP10
Wikipedia pathwaysRANBP10
Orthology - Evolution
OrthoDB57610
GeneTree (enSembl)ENSG00000141084
Phylogenetic Trees/Animal Genes : TreeFamRANBP10
HOGENOMQ6VN20
Homologs : HomoloGeneRANBP10
Homology/Alignments : Family Browser (UCSC)RANBP10
Gene fusions - Rearrangements
Fusion PortalRANBP10 SLC12A4
Fusion PortalRANBP10 RRP15
Fusion : QuiverRANBP10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP10
dbVarRANBP10
ClinVarRANBP10
1000_GenomesRANBP10 
Exome Variant ServerRANBP10
ExAC (Exome Aggregation Consortium)ENSG00000141084
GNOMAD BrowserENSG00000141084
Varsome BrowserRANBP10
Genetic variants : HAPMAP57610
Genomic Variants (DGV)RANBP10 [DGVbeta]
DECIPHERRANBP10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRANBP10 
Mutations
ICGC Data PortalRANBP10 
TCGA Data PortalRANBP10 
Broad Tumor PortalRANBP10
OASIS PortalRANBP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRANBP10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRANBP10
Mutations and Diseases : HGMDRANBP10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP10
DgiDB (Drug Gene Interaction Database)RANBP10
DoCM (Curated mutations)RANBP10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP10 (select a term)
intoGenRANBP10
Cancer3DRANBP10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614031   
Orphanet
DisGeNETRANBP10
MedgenRANBP10
Genetic Testing Registry RANBP10
NextProtQ6VN20 [Medical]
TSGene57610
GENETestsRANBP10
Target ValidationRANBP10
Huge Navigator RANBP10 [HugePedia]
snp3D : Map Gene to Disease57610
BioCentury BCIQRANBP10
ClinGenRANBP10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57610
Chemical/Pharm GKB GenePA134929520
Clinical trialRANBP10
Miscellaneous
canSAR (ICR)RANBP10 (select the gene name)
DataMed IndexRANBP10
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP10
EVEXRANBP10
GoPubMedRANBP10
iHOPRANBP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:02:46 CEST 2019
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