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RARRES2 (retinoic acid receptor responder 2)

Identity

Alias_namesretinoic acid receptor responder (tazarotene induced) 2
Alias_symbol (synonym)TIG2
HP10433
Other alias
HGNC (Hugo) RARRES2
LocusID (NCBI) 5919
Atlas_Id 52620
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150338329 and ends at 150341629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RARRES2   9868
Cards
Entrez_Gene (NCBI)RARRES2  5919  retinoic acid receptor responder 2
AliasesHP10433; TIG2
GeneCards (Weizmann)RARRES2
Ensembl hg19 (Hinxton)ENSG00000106538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106538 [Gene_View]  ENSG00000106538 [Sequence]  chr7:150338329-150341629 [Contig_View]  RARRES2 [Vega]
ICGC DataPortalENSG00000106538
TCGA cBioPortalRARRES2
AceView (NCBI)RARRES2
Genatlas (Paris)RARRES2
WikiGenes5919
SOURCE (Princeton)RARRES2
Genetics Home Reference (NIH)RARRES2
Genomic and cartography
GoldenPath hg38 (UCSC)RARRES2  -     chr7:150338329-150341629 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RARRES2  -     7q36.1   [Description]    (hg19-Feb_2009)
GoldenPathRARRES2 - 7q36.1 [CytoView hg19]  RARRES2 - 7q36.1 [CytoView hg38]
Genome Data Viewer NCBIRARRES2 [Mapview hg19]  
OMIM601973   
Gene and transcription
Genbank (Entrez)AB015632 AK092804 AK312197 BC000069 BM919890
RefSeq transcript (Entrez)NM_002889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RARRES2
Alternative Splicing GalleryENSG00000106538
Gene ExpressionRARRES2 [ NCBI-GEO ]   RARRES2 [ EBI - ARRAY_EXPRESS ]   RARRES2 [ SEEK ]   RARRES2 [ MEM ]
Gene Expression Viewer (FireBrowse)RARRES2 [ Firebrowse - Broad ]
GenevisibleExpression of RARRES2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5919
GTEX Portal (Tissue expression)RARRES2
Human Protein AtlasENSG00000106538-RARRES2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99969   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99969  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99969
Splice isoforms : SwissVarQ99969
PhosPhoSitePlusQ99969
Domains : Interpro (EBI)Chemerin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RARRES2
DMDM Disease mutations5919
SuperfamilyQ99969
Human Protein Atlas [tissue]ENSG00000106538-RARRES2 [tissue]
Peptide AtlasQ99969
HPRD03577
IPIIPI00019176   IPI00945490   
Protein Interaction databases
DIP (DOE-UCLA)Q99969
IntAct (EBI)Q99969
FunCoupENSG00000106538
BioGRIDRARRES2
STRING (EMBL)RARRES2
ZODIACRARRES2
Ontologies - Pathways
QuickGOQ99969
Ontology : AmiGOretinoid metabolic process  positive regulation of protein phosphorylation  platelet degranulation  signaling receptor binding  signaling receptor binding  protein binding  extracellular region  extracellular region  extracellular space  extracellular space  chemotaxis  inflammatory response  insulin receptor signaling pathway  positive regulation of macrophage chemotaxis  antifungal humoral response  cell differentiation  extracellular matrix  platelet dense granule lumen  innate immune response  innate immune response  positive regulation of fat cell differentiation  embryonic digestive tract development  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  positive regulation of chemotaxis  positive regulation of chemotaxis  regulation of lipid catabolic process  regulation of lipid catabolic process  antifungal innate immune response  collagen-containing extracellular matrix  
Ontology : EGO-EBIretinoid metabolic process  positive regulation of protein phosphorylation  platelet degranulation  signaling receptor binding  signaling receptor binding  protein binding  extracellular region  extracellular region  extracellular space  extracellular space  chemotaxis  inflammatory response  insulin receptor signaling pathway  positive regulation of macrophage chemotaxis  antifungal humoral response  cell differentiation  extracellular matrix  platelet dense granule lumen  innate immune response  innate immune response  positive regulation of fat cell differentiation  embryonic digestive tract development  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  positive regulation of chemotaxis  positive regulation of chemotaxis  regulation of lipid catabolic process  regulation of lipid catabolic process  antifungal innate immune response  collagen-containing extracellular matrix  
NDEx NetworkRARRES2
Atlas of Cancer Signalling NetworkRARRES2
Wikipedia pathwaysRARRES2
Orthology - Evolution
OrthoDB5919
GeneTree (enSembl)ENSG00000106538
Phylogenetic Trees/Animal Genes : TreeFamRARRES2
HOGENOMQ99969
Homologs : HomoloGeneRARRES2
Homology/Alignments : Family Browser (UCSC)RARRES2
Gene fusions - Rearrangements
Fusion : QuiverRARRES2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRARRES2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RARRES2
dbVarRARRES2
ClinVarRARRES2
1000_GenomesRARRES2 
Exome Variant ServerRARRES2
GNOMAD BrowserENSG00000106538
Varsome BrowserRARRES2
Genetic variants : HAPMAP5919
Genomic Variants (DGV)RARRES2 [DGVbeta]
DECIPHERRARRES2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRARRES2 
Mutations
ICGC Data PortalRARRES2 
TCGA Data PortalRARRES2 
Broad Tumor PortalRARRES2
OASIS PortalRARRES2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRARRES2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRARRES2
Mutations and Diseases : HGMDRARRES2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutaselect RARRES2
DgiDB (Drug Gene Interaction Database)RARRES2
DoCM (Curated mutations)RARRES2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RARRES2 (select a term)
intoGenRARRES2
Cancer3DRARRES2 (select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601973   
Orphanet
DisGeNETRARRES2
MedgenRARRES2
Genetic Testing Registry RARRES2
NextProtQ99969 [Medical]
TSGene5919
GENETestsRARRES2
Open Targets GeneticsENSG00000106538  [validation]
snp3D : Map Gene to Disease5919
BioCentury BCIQRARRES2
ClinGenRARRES2
Clinical trials, drugs, therapy
Protein Interactions : CTD5919
Pharm GKB GenePA34229
Clinical trialRARRES2
Miscellaneous
canSAR (ICR)RARRES2 (select the gene name)
HarmonizomeRARRES2
DataMed IndexRARRES2
Probes
Litterature
PubMed188 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRARRES2
EVEXRARRES2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jul 11 20:08:16 CEST 2020

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