RBM47 (RNA binding motif protein 47)

2014-08-01  

Identity

HGNC
RBM47
LOCATION
4p14
LOCUSID
54502
ALIAS
NET18
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 54502
HGNC: 30358
Ensembl: ENSG00000163694

Variants:

dbSNP: 54502
ClinVar: 54502
TCGA: ENSG00000163694
COSMIC: RBM47

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000163694ENST00000295971A0AV96
ENSG00000163694ENST00000381793A0AV96
ENSG00000163694ENST00000381795A0AV96
ENSG00000163694ENST00000505220D6RCT1
ENSG00000163694ENST00000505414D6R9M7
ENSG00000163694ENST00000507180D6RA49
ENSG00000163694ENST00000510871D6R9D6
ENSG00000163694ENST00000511598D6RBP6
ENSG00000163694ENST00000511902D6RCT1
ENSG00000163694ENST00000513473D6REZ6
ENSG00000163694ENST00000514014B7Z8Z7
ENSG00000163694ENST00000514782D6RFL5
ENSG00000163694ENST00000515053D6RBS9

Expression (GTEx)

0
10
20
30
40
50
60
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
248987562014Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer.48
286800902017Pan-cancer EMT-signature identifies RBM47 down-regulation during colorectal cancer progression.18
269233282016RNA-binding motif protein 47 inhibits Nrf2 activity to suppress tumor growth in lung adenocarcinoma.12
304031772018miR-25 Promotes Melanoma Progression by regulating RNA binding motif protein 47.5
306203902019Distinct genome-wide methylation patterns in sporadic and hereditary nonfunctioning pancreatic neuroendocrine tumors.3
313589012019RBM47-regulated alternative splicing of TJP1 promotes actin stress fiber assembly during epithelial-to-mesenchymal transition.2

Citation

Dessen P

RBM47 (RNA binding motif protein 47)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54577/rbm47