| Nomenclature |
|---|
| HGNC (Hugo) | RBM8A 9905 |
| LRG (Locus Reference Genomic) | LRG_574 |
| Cards |
|---|
| Entrez_Gene (NCBI) | RBM8A 9939 RNA binding motif protein 8A |
| Aliases | BOV-1A; BOV-1B; BOV-1C; C1DELq21.1; |
| DEL1q21.1; MDS014; RBM8; RBM8B; TAR; Y14; ZNRP; ZRNP1 |
| GeneCards (Weizmann) | RBM8A |
| Ensembl hg19 (Hinxton) | ENSG00000265241 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000265241 [Gene_View] ENSG00000265241 [Sequence] chr1:145921557-145927536 [Contig_View] RBM8A [Vega] |
| ICGC DataPortal | ENSG00000265241 |
| TCGA cBioPortal | RBM8A |
| AceView (NCBI) | RBM8A |
| Genatlas (Paris) | RBM8A |
| WikiGenes | 9939 |
| SOURCE (Princeton) | RBM8A |
| Genetics Home Reference (NIH) | RBM8A |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | RBM8A - chr1:145921557-145927536 - 1q21.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | RBM8A - 1q21.1 [Description] (hg19-Feb_2009) |
| GoldenPath | RBM8A - 1q21.1 [CytoView hg19] RBM8A - 1q21.1 [CytoView hg38] |
| ImmunoBase | ENSG00000265241 |
| Mapping of homologs : NCBI | RBM8A [Mapview hg19] RBM8A [Mapview hg38] |
| OMIM | 274000 605313 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF127761 AF161463 AF182415 AF198620 AF231511 |
| RefSeq transcript (Entrez) | NM_005105 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | RBM8A |
| Cluster EST : Unigene | Hs.591455 [ NCBI ] |
| CGAP (NCI) | Hs.591455 |
| Alternative Splicing Gallery | ENSG00000265241 |
| Gene Expression | RBM8A [ NCBI-GEO ] RBM8A [ EBI - ARRAY_EXPRESS ]
RBM8A [ SEEK ] RBM8A [ MEM ] |
| Gene Expression Viewer (FireBrowse) | RBM8A [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 9939 |
| GTEX Portal (Tissue expression) | RBM8A |
| Human Protein Atlas | ENSG00000265241-RBM8A [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9Y5S9 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9Y5S9 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9Y5S9 |
| Splice isoforms : SwissVar | Q9Y5S9 |
| PhosPhoSitePlus | Q9Y5S9 |
| Domaine pattern : Prosite (Expaxy) | RRM (PS50102) |
| Domains : Interpro (EBI) | Nucleotide-bd_a/b_plait_sf RBD_domain_sf RNA-bd_8 RRM_dom RRM_RBM8 |
| Domain families : Pfam (Sanger) | RRM_1 (PF00076) |
| Domain families : Pfam (NCBI) | pfam00076 |
| Domain families : Smart (EMBL) | RRM (SM00360) |
| Conserved Domain (NCBI) | RBM8A |
| DMDM Disease mutations | 9939 |
| Blocks (Seattle) | RBM8A |
| PDB (RSDB) | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| PDB Europe | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| PDB (PDBSum) | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| PDB (IMB) | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| Structural Biology KnowledgeBase | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| SCOP (Structural Classification of Proteins) | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| CATH (Classification of proteins structures) | 1P27 2HYI 2J0Q 2J0S 2XB2 3EX7 5XJC |
| Superfamily | Q9Y5S9 |
| Human Protein Atlas [tissue] | ENSG00000265241-RBM8A [tissue] |
| Peptide Atlas | Q9Y5S9 |
| HPRD | 05609 |
| IPI | IPI00001757 IPI00216659 IPI00383083 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9Y5S9 |
| IntAct (EBI) | Q9Y5S9 |
| FunCoup | ENSG00000265241 |
| BioGRID | RBM8A |
| STRING (EMBL) | RBM8A |
| ZODIAC | RBM8A |
| Ontologies - Pathways |
|---|
| QuickGO | Q9Y5S9 |
| Ontology : AmiGO | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA binding RNA binding mRNA binding mRNA binding protein binding nucleus nucleus nucleoplasm cytoplasm cytosol RNA export from nucleus mRNA export from nucleus regulation of translation nuclear speck dendrite mRNA 3'-end processing exon-exon junction complex exon-exon junction complex neuronal cell body U2-type catalytic step 1 spliceosome catalytic step 2 spliceosome |
| Ontology : EGO-EBI | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA binding RNA binding mRNA binding mRNA binding protein binding nucleus nucleus nucleoplasm cytoplasm cytosol RNA export from nucleus mRNA export from nucleus regulation of translation nuclear speck dendrite mRNA 3'-end processing exon-exon junction complex exon-exon junction complex neuronal cell body U2-type catalytic step 1 spliceosome catalytic step 2 spliceosome |
| Pathways : KEGG | RNA transport mRNA surveillance pathway Spliceosome |
| NDEx Network | RBM8A |
| Atlas of Cancer Signalling Network | RBM8A |
| Wikipedia pathways | RBM8A |
| Orthology - Evolution |
|---|
| OrthoDB | 9939 |
| GeneTree (enSembl) | ENSG00000265241 |
| Phylogenetic Trees/Animal Genes : TreeFam | RBM8A |
| HOGENOM | Q9Y5S9 |
| Homologs : HomoloGene | RBM8A |
| Homology/Alignments : Family Browser (UCSC) | RBM8A |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | RBM8A |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | RBM8A [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | RBM8A |
| dbVar | RBM8A |
| ClinVar | RBM8A |
| 1000_Genomes | RBM8A |
| Exome Variant Server | RBM8A |
| ExAC (Exome Aggregation Consortium) | ENSG00000265241 |
| GNOMAD Browser | ENSG00000265241 |
| Varsome Browser | RBM8A |
| Genetic variants : HAPMAP | 9939 |
| Genomic Variants (DGV) | RBM8A [DGVbeta] |
| DECIPHER | RBM8A [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | RBM8A |
| Mutations |
|---|
| ICGC Data Portal | RBM8A |
| TCGA Data Portal | RBM8A |
| Broad Tumor Portal | RBM8A |
| OASIS Portal | RBM8A [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | RBM8A [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | RBM8A |
| Mutations and Diseases : HGMD | RBM8A |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | Mendelian genes |
| LOVD (Leiden Open Variation Database) | **PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database |
| BioMuta | search RBM8A |
| DgiDB (Drug Gene Interaction Database) | RBM8A |
| DoCM (Curated mutations) | RBM8A (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | RBM8A (select a term) |
| intoGen | RBM8A |
| Cancer3D | RBM8A(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 274000 605313 |
| Orphanet | 595 |
| DisGeNET | RBM8A |
| Medgen | RBM8A |
| Genetic Testing Registry | RBM8A
|
| NextProt | Q9Y5S9 [Medical] |
| TSGene | 9939 |
| GENETests | RBM8A |
| Target Validation | RBM8A |
| Huge Navigator |
RBM8A [HugePedia] |
| snp3D : Map Gene to Disease | 9939 |
| BioCentury BCIQ | RBM8A |
| ClinGen | RBM8A |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 9939 |
| Chemical/Pharm GKB Gene | PA34270 |
| Clinical trial | RBM8A |
| Miscellaneous |
|---|
| canSAR (ICR) | RBM8A (select the gene name) |
| DataMed Index | RBM8A |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 108 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | RBM8A |
| EVEX | RBM8A |
| GoPubMed | RBM8A |
| iHOP | RBM8A |
