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RCAN3 (RCAN family member 3)

Identity

Alias_namesDSCR1L2
Down syndrome critical region gene 1-like 2
Other aliasMCIP3
RCN3
hRCN3
HGNC (Hugo) RCAN3
LocusID (NCBI) 11123
Atlas_Id 51364
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24502897 and ends at 24537020 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCAN3   3042
Cards
Entrez_Gene (NCBI)RCAN3  11123  RCAN family member 3
AliasesDSCR1L2; MCIP3; RCN3; hRCN3
GeneCards (Weizmann)RCAN3
Ensembl hg19 (Hinxton)ENSG00000117602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117602 [Gene_View]  ENSG00000117602 [Sequence]  chr1:24502897-24537020 [Contig_View]  RCAN3 [Vega]
ICGC DataPortalENSG00000117602
TCGA cBioPortalRCAN3
AceView (NCBI)RCAN3
Genatlas (Paris)RCAN3
WikiGenes11123
SOURCE (Princeton)RCAN3
Genetics Home Reference (NIH)RCAN3
Genomic and cartography
GoldenPath hg38 (UCSC)RCAN3  -     chr1:24502897-24537020 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCAN3  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathRCAN3 - 1p36.11 [CytoView hg19]  RCAN3 - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000117602
Mapping of homologs : NCBIRCAN3 [Mapview hg19]  RCAN3 [Mapview hg38]
OMIM605860   
Gene and transcription
Genbank (Entrez)AF176116 AF176117 AI697154 AY906854 BC035854
RefSeq transcript (Entrez)NM_001251977 NM_001251978 NM_001251979 NM_001251980 NM_001251981 NM_001251982 NM_001251983 NM_001251984 NM_001251985 NM_013441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCAN3
Cluster EST : UnigeneHs.737226 [ NCBI ]
CGAP (NCI)Hs.737226
Alternative Splicing GalleryENSG00000117602
Gene ExpressionRCAN3 [ NCBI-GEO ]   RCAN3 [ EBI - ARRAY_EXPRESS ]   RCAN3 [ SEEK ]   RCAN3 [ MEM ]
Gene Expression Viewer (FireBrowse)RCAN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11123
GTEX Portal (Tissue expression)RCAN3
Human Protein AtlasENSG00000117602-RCAN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKA8
Splice isoforms : SwissVarQ9UKA8
PhosPhoSitePlusQ9UKA8
Domains : Interpro (EBI)Calcipressin    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RCAN3   
Domain families : Pfam (Sanger)Calcipressin (PF04847)   
Domain families : Pfam (NCBI)pfam04847   
Conserved Domain (NCBI)RCAN3
DMDM Disease mutations11123
Blocks (Seattle)RCAN3
SuperfamilyQ9UKA8
Human Protein Atlas [tissue]ENSG00000117602-RCAN3 [tissue]
Peptide AtlasQ9UKA8
HPRD05792
IPIIPI00007419   IPI00217723   IPI00844597   IPI00845485   IPI00854752   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKA8
IntAct (EBI)Q9UKA8
FunCoupENSG00000117602
BioGRIDRCAN3
STRING (EMBL)RCAN3
ZODIACRCAN3
Ontologies - Pathways
QuickGOQ9UKA8
Ontology : AmiGORNA binding  protein binding  cytoplasm  calcium-dependent protein serine/threonine phosphatase regulator activity  anatomical structure morphogenesis  calcium-mediated signaling  phosphatase binding  troponin I binding  regulation of phosphoprotein phosphatase activity  regulation of calcineurin-NFAT signaling cascade  
Ontology : EGO-EBIRNA binding  protein binding  cytoplasm  calcium-dependent protein serine/threonine phosphatase regulator activity  anatomical structure morphogenesis  calcium-mediated signaling  phosphatase binding  troponin I binding  regulation of phosphoprotein phosphatase activity  regulation of calcineurin-NFAT signaling cascade  
NDEx NetworkRCAN3
Atlas of Cancer Signalling NetworkRCAN3
Wikipedia pathwaysRCAN3
Orthology - Evolution
OrthoDB11123
GeneTree (enSembl)ENSG00000117602
Phylogenetic Trees/Animal Genes : TreeFamRCAN3
HOGENOMQ9UKA8
Homologs : HomoloGeneRCAN3
Homology/Alignments : Family Browser (UCSC)RCAN3
Gene fusions - Rearrangements
Fusion : QuiverRCAN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCAN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCAN3
dbVarRCAN3
ClinVarRCAN3
1000_GenomesRCAN3 
Exome Variant ServerRCAN3
ExAC (Exome Aggregation Consortium)ENSG00000117602
GNOMAD BrowserENSG00000117602
Varsome BrowserRCAN3
Genetic variants : HAPMAP11123
Genomic Variants (DGV)RCAN3 [DGVbeta]
DECIPHERRCAN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCAN3 
Mutations
ICGC Data PortalRCAN3 
TCGA Data PortalRCAN3 
Broad Tumor PortalRCAN3
OASIS PortalRCAN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCAN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRCAN3
Mutations and Diseases : HGMDRCAN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCAN3
DgiDB (Drug Gene Interaction Database)RCAN3
DoCM (Curated mutations)RCAN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCAN3 (select a term)
intoGenRCAN3
Cancer3DRCAN3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605860   
Orphanet
DisGeNETRCAN3
MedgenRCAN3
Genetic Testing Registry RCAN3
NextProtQ9UKA8 [Medical]
TSGene11123
GENETestsRCAN3
Target ValidationRCAN3
Huge Navigator RCAN3 [HugePedia]
snp3D : Map Gene to Disease11123
BioCentury BCIQRCAN3
ClinGenRCAN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11123
Chemical/Pharm GKB GenePA162400972
Clinical trialRCAN3
Miscellaneous
canSAR (ICR)RCAN3 (select the gene name)
DataMed IndexRCAN3
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCAN3
EVEXRCAN3
GoPubMedRCAN3
iHOPRCAN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:04:30 CET 2019

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