| Nomenclature |
HGNC (Hugo) | RIOX1 20968 |
| Cards |
Entrez_Gene (NCBI) | RIOX1 79697 ribosomal oxygenase 1 |
Aliases | C14orf169; JMJD9; MAPJD; NO66; |
| ROX; URLC2; hsNO66 |
GeneCards (Weizmann) | RIOX1 |
Ensembl hg19 (Hinxton) | ENSG00000170468 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000170468 [Gene_View]  ENSG00000170468 [Sequence] chr14:73490934-73493401 [Contig_View] RIOX1 [Vega] |
ICGC DataPortal | ENSG00000170468 |
TCGA cBioPortal | RIOX1 |
AceView (NCBI) | RIOX1 |
Genatlas (Paris) | RIOX1 |
WikiGenes | 79697 |
SOURCE (Princeton) | RIOX1 |
Genetics Home Reference (NIH) | RIOX1 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | RIOX1 - chr14:73490934-73493401 + 14q24.3 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | RIOX1 - 14q24.3 [Description] (hg19-Feb_2009) |
GoldenPath | RIOX1 - 14q24.3 [CytoView hg19] RIOX1 - 14q24.3 [CytoView hg38] |
ImmunoBase | ENSG00000170468 |
Mapping of homologs : NCBI | RIOX1 [Mapview hg19] RIOX1 [Mapview hg38] |
OMIM | 611919 |
| Gene and transcription |
Genbank (Entrez) | AB101204 AK025455 AK299994 AY390535 BC011350 |
RefSeq transcript (Entrez) | NM_024644 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | RIOX1 |
Cluster EST : Unigene | Hs.509916 [ NCBI ] |
CGAP (NCI) | Hs.509916 |
Alternative Splicing Gallery | ENSG00000170468 |
Gene Expression | RIOX1 [ NCBI-GEO ] RIOX1 [ EBI - ARRAY_EXPRESS ]
RIOX1 [ SEEK ] RIOX1 [ MEM ] |
Gene Expression Viewer (FireBrowse) | RIOX1 [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 79697 |
GTEX Portal (Tissue expression) | RIOX1 |
Human Protein Atlas | ENSG00000170468-RIOX1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q9H6W3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q9H6W3 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q9H6W3 |
Splice isoforms : SwissVar | Q9H6W3 |
Catalytic activity : Enzyme | 1.14.11.27 [ Enzyme-Expasy ] 1.14.11.271.14.11.27 [ IntEnz-EBI ] 1.14.11.27 [ BRENDA ] 1.14.11.27 [ KEGG ] |
PhosPhoSitePlus | Q9H6W3 |
Domaine pattern : Prosite (Expaxy) | JMJC (PS51184) |
Domains : Interpro (EBI) | JmjC_dom NO66 |
Domain families : Pfam (Sanger) | Cupin_4 (PF08007) |
Domain families : Pfam (NCBI) | pfam08007 |
Conserved Domain (NCBI) | RIOX1 |
DMDM Disease mutations | 79697 |
Blocks (Seattle) | RIOX1 |
PDB (RSDB) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
PDB Europe | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
PDB (PDBSum) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
PDB (IMB) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
Structural Biology KnowledgeBase | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
SCOP (Structural Classification of Proteins) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
CATH (Classification of proteins structures) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
Superfamily | Q9H6W3 |
Human Protein Atlas [tissue] | ENSG00000170468-RIOX1 [tissue] |
Peptide Atlas | Q9H6W3 |
IPI | IPI00002879 IPI00954824 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q9H6W3 |
IntAct (EBI) | Q9H6W3 |
FunCoup | ENSG00000170468 |
BioGRID | RIOX1 |
STRING (EMBL) | RIOX1 |
ZODIAC | RIOX1 |
| Ontologies - Pathways |
QuickGO | Q9H6W3 |
Ontology : AmiGO | iron ion binding protein binding nucleus nucleoplasm nucleolus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors histone demethylase activity (H3-K4 specific) histone demethylase activity (H3-K4 specific) histone H3-K4 demethylation negative regulation of osteoblast differentiation negative regulation of transcription, DNA-templated histone demethylase activity (H3-K36 specific) histone demethylase activity (H3-K36 specific) oxidation-reduction process histone H3-K36 demethylation |
Ontology : EGO-EBI | iron ion binding protein binding nucleus nucleoplasm nucleolus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors histone demethylase activity (H3-K4 specific) histone demethylase activity (H3-K4 specific) histone H3-K4 demethylation negative regulation of osteoblast differentiation negative regulation of transcription, DNA-templated histone demethylase activity (H3-K36 specific) histone demethylase activity (H3-K36 specific) oxidation-reduction process histone H3-K36 demethylation |
NDEx Network | RIOX1 |
Atlas of Cancer Signalling Network | RIOX1 |
Wikipedia pathways | RIOX1 |
| Orthology - Evolution |
OrthoDB | 79697 |
GeneTree (enSembl) | ENSG00000170468 |
Phylogenetic Trees/Animal Genes : TreeFam | RIOX1 |
HOGENOM | Q9H6W3 |
Homologs : HomoloGene | RIOX1 |
Homology/Alignments : Family Browser (UCSC) | RIOX1 |
| Gene fusions - Rearrangements |
Fusion : Quiver | RIOX1 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | RIOX1 [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | RIOX1 |
dbVar | RIOX1 |
ClinVar | RIOX1 |
1000_Genomes | RIOX1 |
Exome Variant Server | RIOX1 |
ExAC (Exome Aggregation Consortium) | ENSG00000170468 |
GNOMAD Browser | ENSG00000170468 |
Varsome Browser | RIOX1 |
Genetic variants : HAPMAP | 79697 |
Genomic Variants (DGV) | RIOX1 [DGVbeta] |
DECIPHER | RIOX1 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | RIOX1 |
| Mutations |
ICGC Data Portal | RIOX1 |
TCGA Data Portal | RIOX1 |
Broad Tumor Portal | RIOX1 |
OASIS Portal | RIOX1 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | RIOX1 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | RIOX1 |
Mutations and Diseases : HGMD | RIOX1 |
BioMuta | search RIOX1 |
DgiDB (Drug Gene Interaction Database) | RIOX1 |
DoCM (Curated mutations) | RIOX1 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | RIOX1 (select a term) |
intoGen | RIOX1 |
Cancer3D | RIOX1(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 611919 |
Orphanet | |
DisGeNET | RIOX1 |
Medgen | RIOX1 |
Genetic Testing Registry | RIOX1
|
NextProt | Q9H6W3 [Medical] |
TSGene | 79697 |
GENETests | RIOX1 |
Target Validation | RIOX1 |
Huge Navigator |
RIOX1 [HugePedia] |
snp3D : Map Gene to Disease | 79697 |
BioCentury BCIQ | RIOX1 |
ClinGen | RIOX1 |
| Clinical trials, drugs, therapy |
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Chemical/Protein Interactions : CTD | 79697 |
Chemical/Pharm GKB Gene | PA134919088 |
Clinical trial | RIOX1 |
| Miscellaneous |
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canSAR (ICR) | RIOX1 (select the gene name) |
DataMed Index | RIOX1 |
| Probes |
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| Litterature |
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PubMed | 27 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | RIOX1 |
EVEX | RIOX1 |
GoPubMed | RIOX1 |
iHOP | RIOX1 |