Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RIOX1 (ribosomal oxygenase 1)

Identity

Alias_namesC14orf169
chromosome 14 open reading frame 169
Alias_symbol (synonym)FLJ21802
NO66
MAPJD
JMJD9
Other aliasROX
URLC2
hsNO66
HGNC (Hugo) RIOX1
LocusID (NCBI) 79697
Atlas_Id 56658
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 73490934 and ends at 73493401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RIOX1   20968
Cards
Entrez_Gene (NCBI)RIOX1  79697  ribosomal oxygenase 1
AliasesC14orf169; JMJD9; MAPJD; NO66; 
ROX; URLC2; hsNO66
GeneCards (Weizmann)RIOX1
Ensembl hg19 (Hinxton)ENSG00000170468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170468 [Gene_View]  ENSG00000170468 [Sequence]  chr14:73490934-73493401 [Contig_View]  RIOX1 [Vega]
ICGC DataPortalENSG00000170468
TCGA cBioPortalRIOX1
AceView (NCBI)RIOX1
Genatlas (Paris)RIOX1
WikiGenes79697
SOURCE (Princeton)RIOX1
Genetics Home Reference (NIH)RIOX1
Genomic and cartography
GoldenPath hg38 (UCSC)RIOX1  -     chr14:73490934-73493401 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIOX1  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathRIOX1 - 14q24.3 [CytoView hg19]  RIOX1 - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000170468
Mapping of homologs : NCBIRIOX1 [Mapview hg19]  RIOX1 [Mapview hg38]
OMIM611919   
Gene and transcription
Genbank (Entrez)AB101204 AK025455 AK299994 AY390535 BC011350
RefSeq transcript (Entrez)NM_024644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIOX1
Cluster EST : UnigeneHs.509916 [ NCBI ]
CGAP (NCI)Hs.509916
Alternative Splicing GalleryENSG00000170468
Gene ExpressionRIOX1 [ NCBI-GEO ]   RIOX1 [ EBI - ARRAY_EXPRESS ]   RIOX1 [ SEEK ]   RIOX1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIOX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79697
GTEX Portal (Tissue expression)RIOX1
Human Protein AtlasENSG00000170468-RIOX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6W3
Splice isoforms : SwissVarQ9H6W3
Catalytic activity : Enzyme1.14.11.27 [ Enzyme-Expasy ]   1.14.11.271.14.11.27 [ IntEnz-EBI ]   1.14.11.27 [ BRENDA ]   1.14.11.27 [ KEGG ]   
PhosPhoSitePlusQ9H6W3
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom    NO66   
Domain families : Pfam (Sanger)Cupin_4 (PF08007)   
Domain families : Pfam (NCBI)pfam08007   
Conserved Domain (NCBI)RIOX1
DMDM Disease mutations79697
Blocks (Seattle)RIOX1
PDB (RSDB)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
PDB Europe4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
PDB (PDBSum)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
PDB (IMB)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
Structural Biology KnowledgeBase4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
SCOP (Structural Classification of Proteins)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
CATH (Classification of proteins structures)4CCJ    4CCK    4CCM    4CCN    4CCO    4DIQ    4E4H    4Y33    4Y3O    4Y4R   
SuperfamilyQ9H6W3
Human Protein Atlas [tissue]ENSG00000170468-RIOX1 [tissue]
Peptide AtlasQ9H6W3
IPIIPI00002879   IPI00954824   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6W3
IntAct (EBI)Q9H6W3
FunCoupENSG00000170468
BioGRIDRIOX1
STRING (EMBL)RIOX1
ZODIACRIOX1
Ontologies - Pathways
QuickGOQ9H6W3
Ontology : AmiGOiron ion binding  protein binding  nucleus  nucleoplasm  nucleolus  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  histone demethylase activity (H3-K4 specific)  histone demethylase activity (H3-K4 specific)  histone H3-K4 demethylation  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  histone demethylase activity (H3-K36 specific)  histone demethylase activity (H3-K36 specific)  oxidation-reduction process  histone H3-K36 demethylation  
Ontology : EGO-EBIiron ion binding  protein binding  nucleus  nucleoplasm  nucleolus  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  histone demethylase activity (H3-K4 specific)  histone demethylase activity (H3-K4 specific)  histone H3-K4 demethylation  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  histone demethylase activity (H3-K36 specific)  histone demethylase activity (H3-K36 specific)  oxidation-reduction process  histone H3-K36 demethylation  
NDEx NetworkRIOX1
Atlas of Cancer Signalling NetworkRIOX1
Wikipedia pathwaysRIOX1
Orthology - Evolution
OrthoDB79697
GeneTree (enSembl)ENSG00000170468
Phylogenetic Trees/Animal Genes : TreeFamRIOX1
HOGENOMQ9H6W3
Homologs : HomoloGeneRIOX1
Homology/Alignments : Family Browser (UCSC)RIOX1
Gene fusions - Rearrangements
Fusion : QuiverRIOX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIOX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIOX1
dbVarRIOX1
ClinVarRIOX1
1000_GenomesRIOX1 
Exome Variant ServerRIOX1
ExAC (Exome Aggregation Consortium)ENSG00000170468
GNOMAD BrowserENSG00000170468
Varsome BrowserRIOX1
Genetic variants : HAPMAP79697
Genomic Variants (DGV)RIOX1 [DGVbeta]
DECIPHERRIOX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIOX1 
Mutations
ICGC Data PortalRIOX1 
TCGA Data PortalRIOX1 
Broad Tumor PortalRIOX1
OASIS PortalRIOX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIOX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRIOX1
Mutations and Diseases : HGMDRIOX1
BioMutasearch RIOX1
DgiDB (Drug Gene Interaction Database)RIOX1
DoCM (Curated mutations)RIOX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIOX1 (select a term)
intoGenRIOX1
Cancer3DRIOX1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611919   
Orphanet
DisGeNETRIOX1
MedgenRIOX1
Genetic Testing Registry RIOX1
NextProtQ9H6W3 [Medical]
TSGene79697
GENETestsRIOX1
Target ValidationRIOX1
Huge Navigator RIOX1 [HugePedia]
snp3D : Map Gene to Disease79697
BioCentury BCIQRIOX1
ClinGenRIOX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79697
Chemical/Pharm GKB GenePA134919088
Clinical trialRIOX1
Miscellaneous
canSAR (ICR)RIOX1 (select the gene name)
DataMed IndexRIOX1
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIOX1
EVEXRIOX1
GoPubMedRIOX1
iHOPRIOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Nov 13 18:05:01 CET 2019
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