| Nomenclature |
|---|
| HGNC (Hugo) | RIOX1 20968 |
| Cards |
|---|
| Entrez_Gene (NCBI) | RIOX1 79697 ribosomal oxygenase 1 |
| Aliases | C14orf169; JMJD9; MAPJD; NO66; |
| ROX; URLC2; hsNO66 |
| GeneCards (Weizmann) | RIOX1 |
| Ensembl hg19 (Hinxton) | ENSG00000170468 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000170468 [Gene_View] ENSG00000170468 [Sequence] chr14:73490934-73493401 [Contig_View] RIOX1 [Vega] |
| ICGC DataPortal | ENSG00000170468 |
| TCGA cBioPortal | RIOX1 |
| AceView (NCBI) | RIOX1 |
| Genatlas (Paris) | RIOX1 |
| WikiGenes | 79697 |
| SOURCE (Princeton) | RIOX1 |
| Genetics Home Reference (NIH) | RIOX1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | RIOX1 - chr14:73490934-73493401 + 14q24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | RIOX1 - 14q24.3 [Description] (hg19-Feb_2009) |
| GoldenPath | RIOX1 - 14q24.3 [CytoView hg19] RIOX1 - 14q24.3 [CytoView hg38] |
| ImmunoBase | ENSG00000170468 |
| genome Data Viewer NCBI | RIOX1 [Mapview hg19] |
| OMIM | 611919 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB101204 AK025455 AK299994 AY390535 BC011350 |
| RefSeq transcript (Entrez) | NM_024644 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | RIOX1 |
| Alternative Splicing Gallery | ENSG00000170468 |
| Gene Expression | RIOX1 [ NCBI-GEO ] RIOX1 [ EBI - ARRAY_EXPRESS ]
RIOX1 [ SEEK ] RIOX1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | RIOX1 [ Firebrowse - Broad ] |
| Genevisible | Expression of RIOX1 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 79697 |
| GTEX Portal (Tissue expression) | RIOX1 |
| Human Protein Atlas | ENSG00000170468-RIOX1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9H6W3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9H6W3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9H6W3 |
| Splice isoforms : SwissVar | Q9H6W3 |
| Catalytic activity : Enzyme | 1.14.11.- [ Enzyme-Expasy ] 1.14.11.-1.14.11.- [ IntEnz-EBI ] 1.14.11.- [ BRENDA ] 1.14.11.- [ KEGG ] [ MEROPS ] |
| PhosPhoSitePlus | Q9H6W3 |
| Domaine pattern : Prosite (Expaxy) | JMJC (PS51184) |
| Domains : Interpro (EBI) | JmjC_dom JmjC_protein |
| Domain families : Pfam (Sanger) | Cupin_4 (PF08007) |
| Domain families : Pfam (NCBI) | pfam08007 |
| Conserved Domain (NCBI) | RIOX1 |
| DMDM Disease mutations | 79697 |
| Blocks (Seattle) | RIOX1 |
| PDB (RSDB) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| PDB Europe | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| PDB (PDBSum) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| PDB (IMB) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| Structural Biology KnowledgeBase | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| SCOP (Structural Classification of Proteins) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| CATH (Classification of proteins structures) | 4CCJ 4CCK 4CCM 4CCN 4CCO 4DIQ 4E4H 4Y33 4Y3O 4Y4R |
| Superfamily | Q9H6W3 |
| Human Protein Atlas [tissue] | ENSG00000170468-RIOX1 [tissue] |
| Peptide Atlas | Q9H6W3 |
| HPRD | 12641 |
| IPI | IPI00002879 IPI00954824 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9H6W3 |
| IntAct (EBI) | Q9H6W3 |
| FunCoup | ENSG00000170468 |
| BioGRID | RIOX1 |
| STRING (EMBL) | RIOX1 |
| ZODIAC | RIOX1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9H6W3 |
| Ontology : AmiGO | iron ion binding protein binding nucleus nucleoplasm nucleolus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors histone demethylase activity (H3-K4 specific) histone demethylase activity (H3-K4 specific) histone H3-K4 demethylation negative regulation of osteoblast differentiation negative regulation of transcription, DNA-templated histone demethylase activity (H3-K36 specific) histone demethylase activity (H3-K36 specific) oxidation-reduction process histone H3-K36 demethylation |
| Ontology : EGO-EBI | iron ion binding protein binding nucleus nucleoplasm nucleolus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors histone demethylase activity (H3-K4 specific) histone demethylase activity (H3-K4 specific) histone H3-K4 demethylation negative regulation of osteoblast differentiation negative regulation of transcription, DNA-templated histone demethylase activity (H3-K36 specific) histone demethylase activity (H3-K36 specific) oxidation-reduction process histone H3-K36 demethylation |
| NDEx Network | RIOX1 |
| Atlas of Cancer Signalling Network | RIOX1 |
| Wikipedia pathways | RIOX1 |
| Orthology - Evolution |
|---|
| OrthoDB | 79697 |
| GeneTree (enSembl) | ENSG00000170468 |
| Phylogenetic Trees/Animal Genes : TreeFam | RIOX1 |
| HOGENOM | Q9H6W3 |
| Homologs : HomoloGene | RIOX1 |
| Homology/Alignments : Family Browser (UCSC) | RIOX1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | RIOX1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | RIOX1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | RIOX1 |
| dbVar | RIOX1 |
| ClinVar | RIOX1 |
| 1000_Genomes | RIOX1 |
| Exome Variant Server | RIOX1 |
| GNOMAD Browser | ENSG00000170468 |
| Varsome Browser | RIOX1 |
| Genetic variants : HAPMAP | 79697 |
| Genomic Variants (DGV) | RIOX1 [DGVbeta] |
| DECIPHER | RIOX1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | RIOX1 |
| Mutations |
|---|
| ICGC Data Portal | RIOX1 |
| TCGA Data Portal | RIOX1 |
| Broad Tumor Portal | RIOX1 |
| OASIS Portal | RIOX1 [ Somatic mutations - Copy number] |
| Mutations and Diseases : HGMD | RIOX1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search RIOX1 |
| DgiDB (Drug Gene Interaction Database) | RIOX1 |
| DoCM (Curated mutations) | RIOX1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | RIOX1 (select a term) |
| intoGen | RIOX1 |
| Cancer3D | RIOX1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 611919 |
| Orphanet | |
| DisGeNET | RIOX1 |
| Medgen | RIOX1 |
| Genetic Testing Registry | RIOX1
|
| NextProt | Q9H6W3 [Medical] |
| TSGene | 79697 |
| GENETests | RIOX1 |
| Target Validation | RIOX1 |
| Huge Navigator |
RIOX1 [HugePedia] |
| snp3D : Map Gene to Disease | 79697 |
| BioCentury BCIQ | RIOX1 |
| ClinGen | RIOX1 |
| Clinical trials, drugs, therapy |
|---|
| Protein Interactions : CTD | 79697 |
| Pharm GKB Gene | PA134919088 |
| Clinical trial | RIOX1 |
| Miscellaneous |
|---|
| canSAR (ICR) | RIOX1 (select the gene name) |
| Harmonizome | RIOX1 |
| DataMed Index | RIOX1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 29 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | RIOX1 |
| EVEX | RIOX1 |
| GoPubMed | RIOX1 |
