Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RIPPLY3 (ripply transcriptional repressor 3)

Identity

Alias (NCBI)DSCR6
HGNC (Hugo) RIPPLY3
HGNC Previous nameDSCR6
HGNC Previous nameDown syndrome critical region gene 6
 ripply3 homolog (zebrafish)
LocusID (NCBI) 53820
Atlas_Id 56039
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 37006702 and ends at 37019662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SIM2 (21q22.13) / RIPPLY3 (21q22.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RIPPLY3   3047
Cards
Entrez_Gene (NCBI)RIPPLY3  53820  ripply transcriptional repressor 3
AliasesDSCR6
GeneCards (Weizmann)RIPPLY3
Ensembl hg19 (Hinxton)ENSG00000183145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183145 [Gene_View]  ENSG00000183145 [Sequence]  chr21:37006702-37019662 [Contig_View]  RIPPLY3 [Vega]
ICGC DataPortalENSG00000183145
TCGA cBioPortalRIPPLY3
AceView (NCBI)RIPPLY3
Genatlas (Paris)RIPPLY3
WikiGenes53820
SOURCE (Princeton)RIPPLY3
Genetics Home Reference (NIH)RIPPLY3
Genomic and cartography
GoldenPath hg38 (UCSC)RIPPLY3  -     chr21:37006702-37019662 +  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIPPLY3  -     21q22.13   [Description]    (hg19-Feb_2009)
GoldenPathRIPPLY3 - 21q22.13 [CytoView hg19]  RIPPLY3 - 21q22.13 [CytoView hg38]
ImmunoBaseENSG00000183145
genome Data Viewer NCBIRIPPLY3 [Mapview hg19]  
OMIM609892   
Gene and transcription
Genbank (Entrez)AB037158 AB037159 AB037160 AB037161
RefSeq transcript (Entrez)NM_001317768 NM_001317777 NM_018962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIPPLY3
Alternative Splicing GalleryENSG00000183145
Gene ExpressionRIPPLY3 [ NCBI-GEO ]   RIPPLY3 [ EBI - ARRAY_EXPRESS ]   RIPPLY3 [ SEEK ]   RIPPLY3 [ MEM ]
Gene Expression Viewer (FireBrowse)RIPPLY3 [ Firebrowse - Broad ]
GenevisibleExpression of RIPPLY3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53820
GTEX Portal (Tissue expression)RIPPLY3
Human Protein AtlasENSG00000183145-RIPPLY3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57055   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57055  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57055
Splice isoforms : SwissVarP57055
PhosPhoSitePlusP57055
Domains : Interpro (EBI)Ripply_fam   
Domain families : Pfam (Sanger)Ripply (PF14998)   
Domain families : Pfam (NCBI)pfam14998   
Conserved Domain (NCBI)RIPPLY3
DMDM Disease mutations53820
Blocks (Seattle)RIPPLY3
SuperfamilyP57055
Human Protein Atlas [tissue]ENSG00000183145-RIPPLY3 [tissue]
Peptide AtlasP57055
HPRD10923
IPIIPI00025671   IPI00220689   
Protein Interaction databases
DIP (DOE-UCLA)P57055
IntAct (EBI)P57055
FunCoupENSG00000183145
BioGRIDRIPPLY3
STRING (EMBL)RIPPLY3
ZODIACRIPPLY3
Ontologies - Pathways
QuickGOP57055
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  protein binding  nucleus  nucleus  heart development  biological_process  negative regulation of cell proliferation  embryonic pattern specification  pharyngeal system development  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  protein binding  nucleus  nucleus  heart development  biological_process  negative regulation of cell proliferation  embryonic pattern specification  pharyngeal system development  
NDEx NetworkRIPPLY3
Atlas of Cancer Signalling NetworkRIPPLY3
Wikipedia pathwaysRIPPLY3
Orthology - Evolution
OrthoDB53820
GeneTree (enSembl)ENSG00000183145
Phylogenetic Trees/Animal Genes : TreeFamRIPPLY3
HOGENOMP57055
Homologs : HomoloGeneRIPPLY3
Homology/Alignments : Family Browser (UCSC)RIPPLY3
Gene fusions - Rearrangements
Fusion : QuiverRIPPLY3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIPPLY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIPPLY3
dbVarRIPPLY3
ClinVarRIPPLY3
1000_GenomesRIPPLY3 
Exome Variant ServerRIPPLY3
GNOMAD BrowserENSG00000183145
Varsome BrowserRIPPLY3
Genetic variants : HAPMAP53820
Genomic Variants (DGV)RIPPLY3 [DGVbeta]
DECIPHERRIPPLY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIPPLY3 
Mutations
ICGC Data PortalRIPPLY3 
TCGA Data PortalRIPPLY3 
Broad Tumor PortalRIPPLY3
OASIS PortalRIPPLY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIPPLY3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRIPPLY3
Mutations and Diseases : HGMDRIPPLY3
BioMutasearch RIPPLY3
DgiDB (Drug Gene Interaction Database)RIPPLY3
DoCM (Curated mutations)RIPPLY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIPPLY3 (select a term)
intoGenRIPPLY3
Cancer3DRIPPLY3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609892   
Orphanet
DisGeNETRIPPLY3
MedgenRIPPLY3
Genetic Testing Registry RIPPLY3
NextProtP57055 [Medical]
TSGene53820
GENETestsRIPPLY3
Target ValidationRIPPLY3
Huge Navigator RIPPLY3 [HugePedia]
snp3D : Map Gene to Disease53820
BioCentury BCIQRIPPLY3
ClinGenRIPPLY3
Clinical trials, drugs, therapy
Protein Interactions : CTD53820
Pharm GKB GenePA27499
Clinical trialRIPPLY3
Miscellaneous
canSAR (ICR)RIPPLY3 (select the gene name)
HarmonizomeRIPPLY3
DataMed IndexRIPPLY3
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIPPLY3
EVEXRIPPLY3
GoPubMedRIPPLY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:33:31 CEST 2020
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