Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNF103 (ring finger protein 103)

Identity

Alias_namesZFP103
zinc finger protein 103 homolog (mouse)
Alias_symbol (synonym)hkf-1
KF1
Other aliasHKF-1
KF-1
ZFP-103
HGNC (Hugo) RNF103
LocusID (NCBI) 7844
Atlas_Id 47236
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 86603393 and ends at 86623877 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF103   12859
Cards
Entrez_Gene (NCBI)RNF103  7844  ring finger protein 103
AliasesHKF-1; KF-1; KF1; ZFP-103; 
ZFP103
GeneCards (Weizmann)RNF103
Ensembl hg19 (Hinxton)ENSG00000239305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239305 [Gene_View]  ENSG00000239305 [Sequence]  chr2:86603393-86623877 [Contig_View]  RNF103 [Vega]
ICGC DataPortalENSG00000239305
TCGA cBioPortalRNF103
AceView (NCBI)RNF103
Genatlas (Paris)RNF103
WikiGenes7844
SOURCE (Princeton)RNF103
Genetics Home Reference (NIH)RNF103
Genomic and cartography
GoldenPath hg38 (UCSC)RNF103  -     chr2:86603393-86623877 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF103  -     2p11.2   [Description]    (hg19-Feb_2009)
GoldenPathRNF103 - 2p11.2 [CytoView hg19]  RNF103 - 2p11.2 [CytoView hg38]
ImmunoBaseENSG00000239305
Mapping of homologs : NCBIRNF103 [Mapview hg19]  RNF103 [Mapview hg38]
OMIM602507   
Gene and transcription
Genbank (Entrez)AI150469 AK122978 AK314180 AW964704 BC022477
RefSeq transcript (Entrez)NM_001198951 NM_001198952 NM_005667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF103
Cluster EST : UnigeneHs.731426 [ NCBI ]
CGAP (NCI)Hs.731426
Alternative Splicing GalleryENSG00000239305
Gene ExpressionRNF103 [ NCBI-GEO ]   RNF103 [ EBI - ARRAY_EXPRESS ]   RNF103 [ SEEK ]   RNF103 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF103 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7844
GTEX Portal (Tissue expression)RNF103
Human Protein AtlasENSG00000239305-RNF103 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00237   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00237  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00237
Splice isoforms : SwissVarO00237
PhosPhoSitePlusO00237
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF103
DMDM Disease mutations7844
Blocks (Seattle)RNF103
SuperfamilyO00237
Human Protein Atlas [tissue]ENSG00000239305-RNF103 [tissue]
Peptide AtlasO00237
HPRD03939
IPIIPI00298022   IPI00978711   IPI01019065   
Protein Interaction databases
DIP (DOE-UCLA)O00237
IntAct (EBI)O00237
FunCoupENSG00000239305
BioGRIDRNF103
STRING (EMBL)RNF103
ZODIACRNF103
Ontologies - Pathways
QuickGOO00237
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  central nervous system development  integral component of membrane  protein ubiquitination  protein ubiquitination  ubiquitin-dependent ERAD pathway  endoplasmic reticulum quality control compartment  metal ion binding  ubiquitin protein ligase activity  endoplasmic reticulum mannose trimming  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  central nervous system development  integral component of membrane  protein ubiquitination  protein ubiquitination  ubiquitin-dependent ERAD pathway  endoplasmic reticulum quality control compartment  metal ion binding  ubiquitin protein ligase activity  endoplasmic reticulum mannose trimming  
NDEx NetworkRNF103
Atlas of Cancer Signalling NetworkRNF103
Wikipedia pathwaysRNF103
Orthology - Evolution
OrthoDB7844
GeneTree (enSembl)ENSG00000239305
Phylogenetic Trees/Animal Genes : TreeFamRNF103
HOGENOMO00237
Homologs : HomoloGeneRNF103
Homology/Alignments : Family Browser (UCSC)RNF103
Gene fusions - Rearrangements
Fusion : QuiverRNF103
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF103 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF103
dbVarRNF103
ClinVarRNF103
1000_GenomesRNF103 
Exome Variant ServerRNF103
ExAC (Exome Aggregation Consortium)ENSG00000239305
GNOMAD BrowserENSG00000239305
Varsome BrowserRNF103
Genetic variants : HAPMAP7844
Genomic Variants (DGV)RNF103 [DGVbeta]
DECIPHERRNF103 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF103 
Mutations
ICGC Data PortalRNF103 
TCGA Data PortalRNF103 
Broad Tumor PortalRNF103
OASIS PortalRNF103 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF103  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF103
Mutations and Diseases : HGMDRNF103
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF103
DgiDB (Drug Gene Interaction Database)RNF103
DoCM (Curated mutations)RNF103 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF103 (select a term)
intoGenRNF103
Cancer3DRNF103(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602507   
Orphanet
DisGeNETRNF103
MedgenRNF103
Genetic Testing Registry RNF103
NextProtO00237 [Medical]
TSGene7844
GENETestsRNF103
Target ValidationRNF103
Huge Navigator RNF103 [HugePedia]
snp3D : Map Gene to Disease7844
BioCentury BCIQRNF103
ClinGenRNF103
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7844
Chemical/Pharm GKB GenePA37448
Clinical trialRNF103
Miscellaneous
canSAR (ICR)RNF103 (select the gene name)
DataMed IndexRNF103
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF103
EVEXRNF103
GoPubMedRNF103
iHOPRNF103
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:05:08 CET 2019
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