Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNF111 (ring finger protein 111)

Identity

Alias (NCBI)ARK
hRNF111
HGNC (Hugo) RNF111
HGNC Alias symbARK
Arkadia
FLJ38008
DKFZP761D081
LocusID (NCBI) 54778
Atlas_Id 42126
Location 15q22.1  [Link to chromosome band 15q22]
Location_base_pair Starts at 58987663 and ends at 59097419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANTXR2 (4q21.21) / RNF111 (15q22.1)EPC2 (2q23.1) / RNF111 (15q22.1)RNF111 (15q22.1) / RNF111 (15q22.1)
RNF111 (15q22.1) / TCF12 (15q21.3)ZNF280D (15q21.3) / RNF111 (15q22.1)RNF111 15q22.1 / TCF12 15q21.3
ZNF280D 15q21.3 / RNF111 15q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF111   17384
Cards
Entrez_Gene (NCBI)RNF111    ring finger protein 111
AliasesARK; hRNF111
GeneCards (Weizmann)RNF111
Ensembl hg19 (Hinxton)ENSG00000157450 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157450 [Gene_View]  ENSG00000157450 [Sequence]  chr15:58987663-59097419 [Contig_View]  RNF111 [Vega]
ICGC DataPortalENSG00000157450
TCGA cBioPortalRNF111
AceView (NCBI)RNF111
Genatlas (Paris)RNF111
SOURCE (Princeton)RNF111
Genetics Home Reference (NIH)RNF111
Genomic and cartography
GoldenPath hg38 (UCSC)RNF111  -     chr15:58987663-59097419 +  15q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF111  -     15q22.1   [Description]    (hg19-Feb_2009)
GoldenPathRNF111 - 15q22.1 [CytoView hg19]  RNF111 - 15q22.1 [CytoView hg38]
ImmunoBaseENSG00000157450
genome Data Viewer NCBIRNF111 [Mapview hg19]  
OMIM605840   
Gene and transcription
Genbank (Entrez)AI189975 AK095327 AK131304 AK131488 AL157474
RefSeq transcript (Entrez)NM_001270528 NM_001270529 NM_001270530 NM_001330331 NM_017610
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF111
Alternative Splicing GalleryENSG00000157450
Gene ExpressionRNF111 [ NCBI-GEO ]   RNF111 [ EBI - ARRAY_EXPRESS ]   RNF111 [ SEEK ]   RNF111 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF111 [ Firebrowse - Broad ]
GenevisibleExpression of RNF111 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54778
GTEX Portal (Tissue expression)RNF111
Human Protein AtlasENSG00000157450-RNF111 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF111
Blocks (Seattle)RNF111
Human Protein Atlas [tissue]ENSG00000157450-RNF111 [tissue]
HPRD09318
IPIIPI00798384   IPI00829658   IPI00418593   
Protein Interaction databases
BioGRIDRNF111
STRING (EMBL)RNF111
ZODIACRNF111
Ontologies - Pathways
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF111
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:43:29 CET 2021
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