Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNF212 (ring finger protein 212)

Identity

Alias_namesLOC285498
hypothetical protein LOC285498
Alias_symbol (synonym)FLJ38841
Other aliasZHP3
HGNC (Hugo) RNF212
LocusID (NCBI) 285498
Atlas_Id 72702
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1071478 and ends at 1113564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RABGAP1L (1q25.1) / RNF212 (4p16.3)RNF212 (4p16.3) / CTBP1 (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF212   27729
Cards
Entrez_Gene (NCBI)RNF212  285498  ring finger protein 212
AliasesZHP3
GeneCards (Weizmann)RNF212
Ensembl hg19 (Hinxton)ENSG00000178222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178222 [Gene_View]  ENSG00000178222 [Sequence]  chr4:1071478-1113564 [Contig_View]  RNF212 [Vega]
ICGC DataPortalENSG00000178222
TCGA cBioPortalRNF212
AceView (NCBI)RNF212
Genatlas (Paris)RNF212
WikiGenes285498
SOURCE (Princeton)RNF212
Genetics Home Reference (NIH)RNF212
Genomic and cartography
GoldenPath hg38 (UCSC)RNF212  -     chr4:1071478-1113564 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF212  -     4p16.3   [Description]    (hg19-Feb_2009)
GoldenPathRNF212 - 4p16.3 [CytoView hg19]  RNF212 - 4p16.3 [CytoView hg38]
ImmunoBaseENSG00000178222
Mapping of homologs : NCBIRNF212 [Mapview hg19]  RNF212 [Mapview hg38]
OMIM612041   612042   
Gene and transcription
Genbank (Entrez)AK096160 AK124578 AK310043 BC036250 BC050356
RefSeq transcript (Entrez)NM_001131034 NM_001193318 NM_001366918 NM_001366919 NM_194439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF212
Cluster EST : UnigeneHs.248290 [ NCBI ]
CGAP (NCI)Hs.248290
Alternative Splicing GalleryENSG00000178222
Gene ExpressionRNF212 [ NCBI-GEO ]   RNF212 [ EBI - ARRAY_EXPRESS ]   RNF212 [ SEEK ]   RNF212 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF212 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285498
GTEX Portal (Tissue expression)RNF212
Human Protein AtlasENSG00000178222-RNF212 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495C1
Splice isoforms : SwissVarQ495C1
PhosPhoSitePlusQ495C1
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_5 (PF14634)   
Domain families : Pfam (NCBI)pfam14634   
Conserved Domain (NCBI)RNF212
DMDM Disease mutations285498
Blocks (Seattle)RNF212
SuperfamilyQ495C1
Human Protein Atlas [tissue]ENSG00000178222-RNF212 [tissue]
Peptide AtlasQ495C1
HPRD14158
IPIIPI00643735   IPI00827771   IPI00828093   IPI00217707   IPI00334332   IPI00966682   IPI00952621   IPI00964027   
Protein Interaction databases
DIP (DOE-UCLA)Q495C1
IntAct (EBI)Q495C1
FunCoupENSG00000178222
BioGRIDRNF212
STRING (EMBL)RNF212
ZODIACRNF212
Ontologies - Pathways
QuickGOQ495C1
Ontology : AmiGOsynaptonemal complex  synaptonemal complex  meiotic gene conversion  synapsis  reciprocal meiotic recombination  protein sumoylation  protein sumoylation  SUMO transferase activity  metal ion binding  chiasma assembly  
Ontology : EGO-EBIsynaptonemal complex  synaptonemal complex  meiotic gene conversion  synapsis  reciprocal meiotic recombination  protein sumoylation  protein sumoylation  SUMO transferase activity  metal ion binding  chiasma assembly  
NDEx NetworkRNF212
Atlas of Cancer Signalling NetworkRNF212
Wikipedia pathwaysRNF212
Orthology - Evolution
OrthoDB285498
GeneTree (enSembl)ENSG00000178222
Phylogenetic Trees/Animal Genes : TreeFamRNF212
HOGENOMQ495C1
Homologs : HomoloGeneRNF212
Homology/Alignments : Family Browser (UCSC)RNF212
Gene fusions - Rearrangements
Fusion : QuiverRNF212
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF212 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF212
dbVarRNF212
ClinVarRNF212
1000_GenomesRNF212 
Exome Variant ServerRNF212
ExAC (Exome Aggregation Consortium)ENSG00000178222
GNOMAD BrowserENSG00000178222
Varsome BrowserRNF212
Genetic variants : HAPMAP285498
Genomic Variants (DGV)RNF212 [DGVbeta]
DECIPHERRNF212 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF212 
Mutations
ICGC Data PortalRNF212 
TCGA Data PortalRNF212 
Broad Tumor PortalRNF212
OASIS PortalRNF212 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF212  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF212
Mutations and Diseases : HGMDRNF212
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF212
DgiDB (Drug Gene Interaction Database)RNF212
DoCM (Curated mutations)RNF212 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF212 (select a term)
intoGenRNF212
Cancer3DRNF212(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612041    612042   
Orphanet
DisGeNETRNF212
MedgenRNF212
Genetic Testing Registry RNF212
NextProtQ495C1 [Medical]
TSGene285498
GENETestsRNF212
Target ValidationRNF212
Huge Navigator RNF212 [HugePedia]
snp3D : Map Gene to Disease285498
BioCentury BCIQRNF212
ClinGenRNF212
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285498
Chemical/Pharm GKB GenePA162401656
Clinical trialRNF212
Miscellaneous
canSAR (ICR)RNF212 (select the gene name)
DataMed IndexRNF212
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF212
EVEXRNF212
GoPubMedRNF212
iHOPRNF212
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:03:32 CEST 2019
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