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RPAP2 (RNA polymerase II associated protein 2)

Identity

Alias_namesC1orf82
chromosome 1 open reading frame 82
Alias_symbol (synonym)FLJ13150
Rtr1
Other alias
HGNC (Hugo) RPAP2
LocusID (NCBI) 79871
Atlas_Id 72775
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 92298965 and ends at 92388175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCY2 (5p15.31) / RPAP2 (1p22.1)RPAP2 (1p22.1) / TBXAS1 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPAP2   25791
Cards
Entrez_Gene (NCBI)RPAP2  79871  RNA polymerase II associated protein 2
AliasesC1orf82; Rtr1
GeneCards (Weizmann)RPAP2
Ensembl hg19 (Hinxton)ENSG00000122484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122484 [Gene_View]  ENSG00000122484 [Sequence]  chr1:92298965-92388175 [Contig_View]  RPAP2 [Vega]
ICGC DataPortalENSG00000122484
TCGA cBioPortalRPAP2
AceView (NCBI)RPAP2
Genatlas (Paris)RPAP2
WikiGenes79871
SOURCE (Princeton)RPAP2
Genetics Home Reference (NIH)RPAP2
Genomic and cartography
GoldenPath hg38 (UCSC)RPAP2  -     chr1:92298965-92388175 +  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPAP2  -     1p22.1   [Description]    (hg19-Feb_2009)
GoldenPathRPAP2 - 1p22.1 [CytoView hg19]  RPAP2 - 1p22.1 [CytoView hg38]
ImmunoBaseENSG00000122484
Mapping of homologs : NCBIRPAP2 [Mapview hg19]  RPAP2 [Mapview hg38]
OMIM611476   
Gene and transcription
Genbank (Entrez)AI612918 AK023212 AK225054 BC031070 BC039014
RefSeq transcript (Entrez)NM_024813
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPAP2
Cluster EST : UnigeneHs.444421 [ NCBI ]
CGAP (NCI)Hs.444421
Alternative Splicing GalleryENSG00000122484
Gene ExpressionRPAP2 [ NCBI-GEO ]   RPAP2 [ EBI - ARRAY_EXPRESS ]   RPAP2 [ SEEK ]   RPAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79871
GTEX Portal (Tissue expression)RPAP2
Human Protein AtlasENSG00000122484-RPAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXW5
Splice isoforms : SwissVarQ8IXW5
PhosPhoSitePlusQ8IXW5
Domaine pattern : Prosite (Expaxy)ZF_RTR1 (PS51479)   
Domains : Interpro (EBI)Rtr1/RPAP2    Rtr1/RPAP2_sf   
Domain families : Pfam (Sanger)RPAP2_Rtr1 (PF04181)   
Domain families : Pfam (NCBI)pfam04181   
Conserved Domain (NCBI)RPAP2
DMDM Disease mutations79871
Blocks (Seattle)RPAP2
SuperfamilyQ8IXW5
Human Protein Atlas [tissue]ENSG00000122484-RPAP2 [tissue]
Peptide AtlasQ8IXW5
HPRD07814
IPIIPI00293375   IPI00787580   IPI00953172   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXW5
IntAct (EBI)Q8IXW5
FunCoupENSG00000122484
BioGRIDRPAP2
STRING (EMBL)RPAP2
ZODIACRPAP2
Ontologies - Pathways
QuickGOQ8IXW5
Ontology : AmiGOprotein serine/threonine phosphatase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  cytosol  RNA polymerase II CTD heptapeptide repeat phosphatase activity  RNA polymerase II CTD heptapeptide repeat phosphatase activity  snRNA transcription  RNA polymerase II, holoenzyme  snRNA transcription by RNA polymerase II  RNA polymerase core enzyme binding  metal ion binding  dephosphorylation of RNA polymerase II C-terminal domain  dephosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIprotein serine/threonine phosphatase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  cytosol  RNA polymerase II CTD heptapeptide repeat phosphatase activity  RNA polymerase II CTD heptapeptide repeat phosphatase activity  snRNA transcription  RNA polymerase II, holoenzyme  snRNA transcription by RNA polymerase II  RNA polymerase core enzyme binding  metal ion binding  dephosphorylation of RNA polymerase II C-terminal domain  dephosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkRPAP2
Atlas of Cancer Signalling NetworkRPAP2
Wikipedia pathwaysRPAP2
Orthology - Evolution
OrthoDB79871
GeneTree (enSembl)ENSG00000122484
Phylogenetic Trees/Animal Genes : TreeFamRPAP2
HOGENOMQ8IXW5
Homologs : HomoloGeneRPAP2
Homology/Alignments : Family Browser (UCSC)RPAP2
Gene fusions - Rearrangements
Fusion : QuiverRPAP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAP2
dbVarRPAP2
ClinVarRPAP2
1000_GenomesRPAP2 
Exome Variant ServerRPAP2
ExAC (Exome Aggregation Consortium)ENSG00000122484
GNOMAD BrowserENSG00000122484
Varsome BrowserRPAP2
Genetic variants : HAPMAP79871
Genomic Variants (DGV)RPAP2 [DGVbeta]
DECIPHERRPAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPAP2 
Mutations
ICGC Data PortalRPAP2 
TCGA Data PortalRPAP2 
Broad Tumor PortalRPAP2
OASIS PortalRPAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPAP2
Mutations and Diseases : HGMDRPAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPAP2
DgiDB (Drug Gene Interaction Database)RPAP2
DoCM (Curated mutations)RPAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPAP2 (select a term)
intoGenRPAP2
Cancer3DRPAP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611476   
Orphanet
DisGeNETRPAP2
MedgenRPAP2
Genetic Testing Registry RPAP2
NextProtQ8IXW5 [Medical]
TSGene79871
GENETestsRPAP2
Target ValidationRPAP2
Huge Navigator RPAP2 [HugePedia]
snp3D : Map Gene to Disease79871
BioCentury BCIQRPAP2
ClinGenRPAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79871
Chemical/Pharm GKB GenePA162401981
Clinical trialRPAP2
Miscellaneous
canSAR (ICR)RPAP2 (select the gene name)
DataMed IndexRPAP2
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPAP2
EVEXRPAP2
GoPubMedRPAP2
iHOPRPAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:03:51 CEST 2019

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