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RRP15 (ribosomal RNA processing 15 homolog)

Identity

Alias (NCBI)CGI-115
KIAA0507
HGNC (Hugo) RRP15
HGNC Alias symbCGI-115
HGNC Previous nameKIAA0507
HGNC Previous nameKIAA0507
 ribosomal RNA processing 15 homolog (S. cerevisiae)
LocusID (NCBI) 51018
Atlas_Id 53040
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 218285293 and ends at 218337983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACBD6 (1q25.2) / RRP15 (1q41)DENND1B (1q31.3) / RRP15 (1q41)RANBP10 (16q22.1) / RRP15 (1q41)
RRP15 (1q41) / HYOU1 (11q23.3)ACBD6 RRP15DENND1B 1q31.3 / RRP15 1q41
RANBP10 16q22.1 / RRP15 1q41

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(1;1)(q25;q41) ACBD6/RRP15
t(1;1)(q31;q41) DENND1B/RRP15
t(1;16)(q41;q22) RANBP10/RRP15


External links

Nomenclature
HGNC (Hugo)RRP15   24255
Cards
Entrez_Gene (NCBI)RRP15  51018  ribosomal RNA processing 15 homolog
AliasesCGI-115; KIAA0507
GeneCards (Weizmann)RRP15
Ensembl hg19 (Hinxton)ENSG00000067533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067533 [Gene_View]  ENSG00000067533 [Sequence]  chr1:218285293-218337983 [Contig_View]  RRP15 [Vega]
ICGC DataPortalENSG00000067533
TCGA cBioPortalRRP15
AceView (NCBI)RRP15
Genatlas (Paris)RRP15
WikiGenes51018
SOURCE (Princeton)RRP15
Genetics Home Reference (NIH)RRP15
Genomic and cartography
GoldenPath hg38 (UCSC)RRP15  -     chr1:218285293-218337983 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRP15  -     1q41   [Description]    (hg19-Feb_2009)
GoldenPathRRP15 - 1q41 [CytoView hg19]  RRP15 - 1q41 [CytoView hg38]
ImmunoBaseENSG00000067533
genome Data Viewer NCBIRRP15 [Mapview hg19]  
OMIM611193   
Gene and transcription
Genbank (Entrez)AB007976 AF151873 AK290066 AW029169 BC003668
RefSeq transcript (Entrez)NM_016052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRP15
Alternative Splicing GalleryENSG00000067533
Gene ExpressionRRP15 [ NCBI-GEO ]   RRP15 [ EBI - ARRAY_EXPRESS ]   RRP15 [ SEEK ]   RRP15 [ MEM ]
Gene Expression Viewer (FireBrowse)RRP15 [ Firebrowse - Broad ]
GenevisibleExpression of RRP15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51018
GTEX Portal (Tissue expression)RRP15
Human Protein AtlasENSG00000067533-RRP15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3B9
Splice isoforms : SwissVarQ9Y3B9
PhosPhoSitePlusQ9Y3B9
Domains : Interpro (EBI)Rrp15   
Domain families : Pfam (Sanger)Rrp15p (PF07890)   
Domain families : Pfam (NCBI)pfam07890   
Conserved Domain (NCBI)RRP15
DMDM Disease mutations51018
Blocks (Seattle)RRP15
SuperfamilyQ9Y3B9
Human Protein Atlas [tissue]ENSG00000067533-RRP15 [tissue]
Peptide AtlasQ9Y3B9
HPRD10822
IPIIPI00007004   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3B9
IntAct (EBI)Q9Y3B9
FunCoupENSG00000067533
BioGRIDRRP15
STRING (EMBL)RRP15
ZODIACRRP15
Ontologies - Pathways
QuickGOQ9Y3B9
Ontology : AmiGOmaturation of 5.8S rRNA  maturation of LSU-rRNA  preribosome, large subunit precursor  
Ontology : EGO-EBImaturation of 5.8S rRNA  maturation of LSU-rRNA  preribosome, large subunit precursor  
NDEx NetworkRRP15
Atlas of Cancer Signalling NetworkRRP15
Wikipedia pathwaysRRP15
Orthology - Evolution
OrthoDB51018
GeneTree (enSembl)ENSG00000067533
Phylogenetic Trees/Animal Genes : TreeFamRRP15
HOGENOMQ9Y3B9
Homologs : HomoloGeneRRP15
Homology/Alignments : Family Browser (UCSC)RRP15
Gene fusions - Rearrangements
Fusion : MitelmanACBD6/RRP15 [1q25.2/1q41]  
Fusion : MitelmanDENND1B/RRP15 [1q31.3/1q41]  
Fusion : MitelmanRANBP10/RRP15 [16q22.1/1q41]  
Fusion PortalDENND1B 1q31.3 RRP15 1q41 BRCA
Fusion PortalRANBP10 16q22.1 RRP15 1q41 BRCA
Fusion : QuiverRRP15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRP15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRP15
dbVarRRP15
ClinVarRRP15
MonarchRRP15
1000_GenomesRRP15 
Exome Variant ServerRRP15
GNOMAD BrowserENSG00000067533
Varsome BrowserRRP15
Genetic variants : HAPMAP51018
Genomic Variants (DGV)RRP15 [DGVbeta]
DECIPHERRRP15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRP15 
Mutations
ICGC Data PortalRRP15 
TCGA Data PortalRRP15 
Broad Tumor PortalRRP15
OASIS PortalRRP15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRP15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRRP15
Mutations and Diseases : HGMDRRP15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRP15
DgiDB (Drug Gene Interaction Database)RRP15
DoCM (Curated mutations)RRP15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRP15 (select a term)
intoGenRRP15
Cancer3DRRP15(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611193   
Orphanet
DisGeNETRRP15
MedgenRRP15
Genetic Testing Registry RRP15
NextProtQ9Y3B9 [Medical]
TSGene51018
GENETestsRRP15
Target ValidationRRP15
Huge Navigator RRP15 [HugePedia]
snp3D : Map Gene to Disease51018
BioCentury BCIQRRP15
ClinGenRRP15
Clinical trials, drugs, therapy
Protein Interactions : CTD51018
Pharm GKB GenePA162402123
Clinical trialRRP15
Miscellaneous
canSAR (ICR)RRP15 (select the gene name)
HarmonizomeRRP15
DataMed IndexRRP15
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRP15
EVEXRRP15
GoPubMedRRP15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:31:03 CEST 2020

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