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RSL24D1 (ribosomal L24 domain containing 1)

Identity

Alias (NCBI)C15orf15
HRP-L30-iso
L30
RLP24
RPL24
RPL24L
TVAS3
HGNC (Hugo) RSL24D1
HGNC Alias symbHRP-L30-iso
L30
RPL24L
RPL24
HGNC Previous nameC15orf15
HGNC Previous namechromosome 15 open reading frame 15
LocusID (NCBI) 51187
Atlas_Id 72905
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55181314 and ends at 55197033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RSL24D1 (15q21.3) / RAB27A (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  RSL24D1/RAB27A (15q21)

External links

Nomenclature
HGNC (Hugo)RSL24D1   18479
Cards
Entrez_Gene (NCBI)RSL24D1    ribosomal L24 domain containing 1
AliasesC15orf15; HRP-L30-iso; L30; RLP24; 
RPL24; RPL24L; TVAS3
GeneCards (Weizmann)RSL24D1
Ensembl hg19 (Hinxton)ENSG00000137876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137876 [Gene_View]  ENSG00000137876 [Sequence]  chr15:55181314-55197033 [Contig_View]  RSL24D1 [Vega]
ICGC DataPortalENSG00000137876
TCGA cBioPortalRSL24D1
AceView (NCBI)RSL24D1
Genatlas (Paris)RSL24D1
SOURCE (Princeton)RSL24D1
Genetics Home Reference (NIH)RSL24D1
Genomic and cartography
GoldenPath hg38 (UCSC)RSL24D1  -     chr15:55181314-55197033 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RSL24D1  -     15q21.3   [Description]    (hg19-Feb_2009)
GoldenPathRSL24D1 - 15q21.3 [CytoView hg19]  RSL24D1 - 15q21.3 [CytoView hg38]
ImmunoBaseENSG00000137876
genome Data Viewer NCBIRSL24D1 [Mapview hg19]  
OMIM613262   
Gene and transcription
Genbank (Entrez)AB462502 AF060926 AF165521 AF201949 AF212226
RefSeq transcript (Entrez)NM_016304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RSL24D1
Alternative Splicing GalleryENSG00000137876
Gene ExpressionRSL24D1 [ NCBI-GEO ]   RSL24D1 [ EBI - ARRAY_EXPRESS ]   RSL24D1 [ SEEK ]   RSL24D1 [ MEM ]
Gene Expression Viewer (FireBrowse)RSL24D1 [ Firebrowse - Broad ]
GenevisibleExpression of RSL24D1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51187
GTEX Portal (Tissue expression)RSL24D1
Human Protein AtlasENSG00000137876-RSL24D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHA3
Splice isoforms : SwissVarQ9UHA3
PhosPhoSitePlusQ9UHA3
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L24E (PS01073)   
Domains : Interpro (EBI)L24e/L24_sf    Ribosomal_L24e    Ribosomal_L24e-rel    Ribosomal_L24e_CS    TRASH_dom   
Domain families : Pfam (Sanger)Ribosomal_L24e (PF01246)   
Domain families : Pfam (NCBI)pfam01246   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)RSL24D1
Blocks (Seattle)RSL24D1
SuperfamilyQ9UHA3
Human Protein Atlas [tissue]ENSG00000137876-RSL24D1 [tissue]
Peptide AtlasQ9UHA3
HPRD12665
IPIIPI00008437   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHA3
IntAct (EBI)Q9UHA3
BioGRIDRSL24D1
STRING (EMBL)RSL24D1
ZODIACRSL24D1
Ontologies - Pathways
QuickGOQ9UHA3
Ontology : AmiGOribosomal large subunit assembly  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  translation  cytosolic large ribosomal subunit  assembly of large subunit precursor of preribosome  
Ontology : EGO-EBIribosomal large subunit assembly  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  translation  cytosolic large ribosomal subunit  assembly of large subunit precursor of preribosome  
Pathways : KEGGRibosome   
NDEx NetworkRSL24D1
Atlas of Cancer Signalling NetworkRSL24D1
Wikipedia pathwaysRSL24D1
Orthology - Evolution
OrthoDB51187
GeneTree (enSembl)ENSG00000137876
Phylogenetic Trees/Animal Genes : TreeFamRSL24D1
HOGENOMQ9UHA3
Homologs : HomoloGeneRSL24D1
Homology/Alignments : Family Browser (UCSC)RSL24D1
Gene fusions - Rearrangements
Fusion : QuiverRSL24D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRSL24D1 [hg38]
dbVarRSL24D1
ClinVarRSL24D1
MonarchRSL24D1
1000_GenomesRSL24D1 
Exome Variant ServerRSL24D1
GNOMAD BrowserENSG00000137876
Varsome BrowserRSL24D1
Genomic Variants (DGV)RSL24D1 [DGVbeta]
DECIPHERRSL24D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRSL24D1 
Mutations
ICGC Data PortalRSL24D1 
TCGA Data PortalRSL24D1 
Broad Tumor PortalRSL24D1
OASIS PortalRSL24D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRSL24D1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRSL24D1
Mutations and Diseases : HGMDRSL24D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RSL24D1
DgiDB (Drug Gene Interaction Database)RSL24D1
DoCM (Curated mutations)RSL24D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RSL24D1 (select a term)
intoGenRSL24D1
Cancer3DRSL24D1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613262   
Orphanet
DisGeNETRSL24D1
MedgenRSL24D1
Genetic Testing Registry RSL24D1
NextProtQ9UHA3 [Medical]
GENETestsRSL24D1
Target ValidationRSL24D1
Huge Navigator RSL24D1 [HugePedia]
ClinGenRSL24D1
Clinical trials, drugs, therapy
MyCancerGenomeRSL24D1
Protein Interactions : CTD
Pharm GKB GenePA164725551
Clinical trialRSL24D1
Miscellaneous
canSAR (ICR)RSL24D1 (select the gene name)
HarmonizomeRSL24D1
DataMed IndexRSL24D1
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRSL24D1
EVEXRSL24D1
GoPubMedRSL24D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:25:46 CET 2020
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