Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RXRG (retinoid X receptor, gamma)

Identity

Other namesNR2B3
RXRC
HGNC (Hugo) RXRG
LocusID (NCBI) 6258
Location 1q23.3
Location_base_pair Starts at 165370159 and ends at 165414592 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RXRG   10479
Cards
Entrez_Gene (NCBI)RXRG  6258  retinoid X receptor, gamma
GeneCards (Weizmann)RXRG
Ensembl (Hinxton)ENSG00000143171 [Gene_View]  chr1:165370159-165414592 [Contig_View]  RXRG [Vega]
ICGC DataPortalENSG00000143171
cBioPortalRXRG
AceView (NCBI)RXRG
Genatlas (Paris)RXRG
WikiGenes6258
SOURCE (Princeton)NM_001256570 NM_001256571 NM_006917
Genomic and cartography
GoldenPath (UCSC)RXRG  -  1q23.3   chr1:165370159-165414592 -  1q23.3   [Description]    (hg19-Feb_2009)
EnsemblRXRG - 1q23.3 [CytoView]
Mapping of homologs : NCBIRXRG [Mapview]
OMIM180247   
Gene and transcription
Genbank (Entrez)AB307706 AB593015 AB593016 AK125497 AK312922
RefSeq transcript (Entrez)NM_001256570 NM_001256571 NM_006917
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_029517 NT_004487 NW_001838532 NW_004929293
Consensus coding sequences : CCDS (NCBI)RXRG
Cluster EST : UnigeneHs.26550 [ NCBI ]
CGAP (NCI)Hs.26550
Alternative Splicing : Fast-db (Paris)GSHG0002694
Alternative Splicing GalleryENSG00000143171
Gene ExpressionRXRG [ NCBI-GEO ]     RXRG [ SEEK ]   RXRG [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48443 (Uniprot)
NextProtP48443  [Medical]
With graphics : InterProP48443
Splice isoforms : SwissVarP48443 (Swissvar)
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (EBI)Nuc_recep-AF1 [organisation]   Nucl_hormone_rcpt_ligand-bd [organisation]   Nucl_hrmn_rcpt_lig-bd_core [organisation]   Retinoid-X_rcpt/HNF4 [organisation]   Str_hrmn_rcpt [organisation]   Znf_hrmn_rcpt [organisation]   Znf_NHR/GATA [organisation]  
Related proteins : CluSTrP48443
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    Nuc_recep-AF1 (PF11825)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam11825    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM Disease mutations6258
Blocks (Seattle)P48443
PDB (SRS)2GL8   
PDB (PDBSum)2GL8   
PDB (IMB)2GL8   
PDB (RSDB)2GL8   
Human Protein AtlasENSG00000143171 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP48443
HPRD01579
IPIIPI00009736   IPI00982797   
Protein Interaction databases
DIP (DOE-UCLA)P48443
IntAct (EBI)P48443
FunCoupENSG00000143171
BioGRIDRXRG
InParanoidP48443
Interologous Interaction database P48443
IntegromeDBRXRG
STRING (EMBL)RXRG
Ontologies - Pathways
Ontology : AmiGOsteroid hormone receptor activity  9-cis retinoic acid receptor activity  protein binding  nucleoplasm  transcription initiation from RNA polymerase II promoter  peripheral nervous system development  heart development  skeletal muscle tissue development  zinc ion binding  gene expression  neuron differentiation  regulation of myelination  response to retinoic acid  steroid hormone mediated signaling pathway  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  retinoic acid receptor signaling pathway  
Ontology : EGO-EBIsteroid hormone receptor activity  9-cis retinoic acid receptor activity  protein binding  nucleoplasm  transcription initiation from RNA polymerase II promoter  peripheral nervous system development  heart development  skeletal muscle tissue development  zinc ion binding  gene expression  neuron differentiation  regulation of myelination  response to retinoic acid  steroid hormone mediated signaling pathway  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  retinoic acid receptor signaling pathway  
Pathways : KEGGPPAR signaling pathway    Thyroid hormone signaling pathway    Adipocytokine signaling pathway    Pathways in cancer    Transcriptional misregulation in cancer    Thyroid cancer    Small cell lung cancer    Non-small cell lung cancer   
Protein Interaction DatabaseRXRG
Wikipedia pathwaysRXRG
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RXRG
snp3D : Map Gene to Disease6258
SNP (GeneSNP Utah)RXRG
SNP : HGBaseRXRG
Genetic variants : HAPMAPRXRG
Exome VariantRXRG
1000_GenomesRXRG 
ICGC programENSG00000143171 
Somatic Mutations in Cancer : COSMICRXRG 
CONAN: Copy Number AnalysisRXRG 
Mutations and Diseases : HGMDRXRG
Genomic VariantsRXRG  RXRG [DGVbeta]
dbVarRXRG
ClinVarRXRG
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM180247   
MedgenRXRG
GENETestsRXRG
Disease Genetic AssociationRXRG
Huge Navigator RXRG [HugePedia]  RXRG [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRXRG
Homology/Alignments : Family Browser (UCSC)RXRG
Phylogenetic Trees/Animal Genes : TreeFamRXRG
Chemical/Protein Interactions : CTD6258
Chemical/Pharm GKB GenePA34892
Clinical trialRXRG
Cancer Resource (Charite)ENSG00000143171
Other databases
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
CoreMineRXRG
iHOPRXRG
OncoSearchRXRG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:14:02 CEST 2014

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