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SCAT1 (S-phase cancer associated transcript 1)

Identity

Alias_symbol (synonym)CTD-2357A8.3
XLOC_012582
Other aliasLINC02081
HGNC (Hugo) SCAT1
LocusID (NCBI) 101928710
Atlas_Id 79663
Location 17q25.3  [Link to chromosome band 17q25]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SCAT1   52930
Cards
Entrez_Gene (NCBI)SCAT1  101928710  S-phase cancer associated transcript 1
AliasesLINC02081; XLOC_012582
GeneCards (Weizmann)SCAT1
Ensembl hg19 (Hinxton)ENSG00000267123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267123 [Gene_View]  ENSG00000267123 [Sequence]  - [Contig_View]  SCAT1 [Vega]
ICGC DataPortalENSG00000267123
TCGA cBioPortalSCAT1
AceView (NCBI)SCAT1
Genatlas (Paris)SCAT1
WikiGenes101928710
SOURCE (Princeton)SCAT1
Genetics Home Reference (NIH)SCAT1
Genomic and cartography
GoldenPath hg38 (UCSC)SCAT1  -  
GoldenPath hg19 (UCSC)SCAT1  -  
GoldenPathSCAT1 - [CytoView hg19]  SCAT1 - [CytoView hg38]
ImmunoBaseENSG00000267123
Mapping of homologs : NCBISCAT1 [Mapview hg19]  SCAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG613706 BX362577
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAT1
Alternative Splicing GalleryENSG00000267123
Gene ExpressionSCAT1 [ NCBI-GEO ]   SCAT1 [ EBI - ARRAY_EXPRESS ]   SCAT1 [ SEEK ]   SCAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928710
GTEX Portal (Tissue expression)SCAT1
Human Protein AtlasENSG00000267123-SCAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCAT1
DMDM Disease mutations101928710
Blocks (Seattle)SCAT1
Human Protein Atlas [tissue]ENSG00000267123-SCAT1 [tissue]
Protein Interaction databases
FunCoupENSG00000267123
BioGRIDSCAT1
STRING (EMBL)SCAT1
ZODIACSCAT1
Ontologies - Pathways
Huge Navigator SCAT1 [HugePedia]
snp3D : Map Gene to Disease101928710
BioCentury BCIQSCAT1
ClinGenSCAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928710
Clinical trialSCAT1
Miscellaneous
canSAR (ICR)SCAT1 (select the gene name)
DataMed IndexSCAT1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAT1
EVEXSCAT1
GoPubMedSCAT1
iHOPSCAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:20:31 CET 2020

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