Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SDHAF2 (succinate dehydrogenase complex assembly factor 2)

Identity

Other namesC11orf79
PGL2
SDH5
HGNC (Hugo) SDHAF2
LocusID (NCBI) 54949
Location 11q12.2
Location_base_pair Starts at 61197597 and ends at 61214239 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SDHAF2   26034
Entrez_Gene (NCBI)SDHAF2  54949  succinate dehydrogenase complex assembly factor 2
Cards
GeneCards (Weizmann)SDHAF2
Ensembl (Hinxton) [Gene_View]  chr11:61197597-61214239 [Contig_View]  SDHAF2 [Vega]
AceView (NCBI)SDHAF2
Genatlas (Paris)SDHAF2
SOURCE (Stanford)NM_017841
Genomic and cartography
GoldenPath (UCSC)SDHAF2  -  11q12.2   chr11:61197597-61214239 +  11q12.2   [Description]    (hg19-Feb_2009)
EnsemblSDHAF2 - 11q12.2 [CytoView]
Mapping of homologs : NCBISDHAF2 [Mapview]
OMIM601650   613019   
Gene and transcription
Genbank (Entrez)AI039966 AI660205 AK000494 BC002331
RefSeq transcript (SRS)NM_017841
RefSeq transcript (Entrez)NM_017841
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NG_023393 NT_167190 NW_001838024 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_023393 NT_167190 NW_001838024 NW_004078072
Consensus coding sequences : CCDS (NCBI)SDHAF2
Cluster EST : UnigeneHs.313247 [ SRS ] Hs.313247 [ NCBI ]
CGAP (NCI)Hs.313247
Alternative Splicing : Fast-db (Paris)GSHG0004903
Gene ExpressionSDHAF2 [ NCBI-GEO ]   SDHAF2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX18 (SRS) Q9NX18 (Uniprot)
NextProtQ9NX18
With graphics : InterProQ9NX18
Splice isoforms : SwissVarQ9NX18(Swissvar)
Domains : Interpro (SRS)DUF339   
Domains : Interpro (EBI)DUF339   
Related proteins : CluSTrQ9NX18
Domain families : Pfam (SRS)Sdh5 (PF03937)   
Domain families : Pfam (Sanger)Sdh5 (PF03937)   
Domain families : Pfam (NCBI)pfam03937   
DMDM54949
Blocks (Seattle)Q9NX18
HPRD07915
IPIIPI00016443   IPI01015352   IPI01011066   IPI01011516   IPI01011370   IPI00978638   IPI01013539   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX18
IntAct (EBI)Q9NX18
REACTOMESDHAF2
Protein Interaction Database54949
BioGRIDSDHAF2
InParanoidQ9NX18
Interologous Interaction database Q9NX18
IntegromeDBSDHAF2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SDHAF2
SNP (GeneSNP Utah)SDHAF2
SNP : HGBaseSDHAF2
Genetic variants : HAPMAPSDHAF2
Somatic Mutations in Cancer : COSMICSDHAF2 
CONAN: Copy Number AnalysisSDHAF2 
Mutations and Diseases : HGMDSDHAF2
OMIM601650    613019   
GENETests601650    613019   
Disease Genetic AssociationSDHAF2
Huge Navigator SDHAF2 [HugePedia]  SDHAF2 [HugeCancerGEM]
Genomic VariantsSDHAF2  SDHAF2 [DGVbeta]
ClinVarSDHAF2
snp3D : Map Gene to Disease54949
General knowledge
Homologs : HomoloGeneSDHAF2
Homology/Alignments : Family Browser (UCSC)SDHAF2
Phylogenetic Trees/Animal Genes : TreeFamSDHAF2
Chemical/Protein Interactions : CTD54949
Chemical/Pharm GKB GenePA165543618
Clinical trialSDHAF2
Ontology : AmiGOprotein binding  nucleolus  cytoplasm  mitochondrion  mitochondrial electron transport, succinate to ubiquinone  protein-FAD linkage  
Ontology : EGO-EBIprotein binding  nucleolus  cytoplasm  mitochondrion  mitochondrial electron transport, succinate to ubiquinone  protein-FAD linkage  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneSDHAF2
iHOPSDHAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:59:00 CEST 2013
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