Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDHAF2 (succinate dehydrogenase complex assembly factor 2)

Identity

Other namesC11orf79
PGL2
SDH5
HGNC (Hugo) SDHAF2
LocusID (NCBI) 54949
Location 11q12.2
Location_base_pair Starts at 61197597 and ends at 61214239 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SDHAF2   26034
Cards
Entrez_Gene (NCBI)SDHAF2  54949  succinate dehydrogenase complex assembly factor 2
GeneCards (Weizmann)SDHAF2
Ensembl (Hinxton) [Gene_View]  chr11:61197597-61214239 [Contig_View]  SDHAF2 [Vega]
cBioPortalSDHAF2
AceView (NCBI)SDHAF2
Genatlas (Paris)SDHAF2
WikiGenes54949
SOURCE (Princeton)NM_017841
Genomic and cartography
GoldenPath (UCSC)SDHAF2  -  11q12.2   chr11:61197597-61214239 +  11q12.2   [Description]    (hg19-Feb_2009)
EnsemblSDHAF2 - 11q12.2 [CytoView]
Mapping of homologs : NCBISDHAF2 [Mapview]
OMIM601650   613019   
Gene and transcription
Genbank (Entrez)AI039966 AI660205 AK000494 BC002331
RefSeq transcript (Entrez)NM_017841
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_023393 NT_167190 NW_001838024 NW_004929380
Consensus coding sequences : CCDS (NCBI)SDHAF2
Cluster EST : UnigeneHs.313247 [ NCBI ]
CGAP (NCI)Hs.313247
Alternative Splicing : Fast-db (Paris)GSHG0004903
Gene ExpressionSDHAF2 [ NCBI-GEO ]     SDHAF2 [ SEEK ]   SDHAF2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX18 (Uniprot)
NextProtQ9NX18  [Medical]
With graphics : InterProQ9NX18
Splice isoforms : SwissVarQ9NX18 (Swissvar)
Domains : Interpro (EBI)SDH [organisation]   SDHAF2 [organisation]  
Related proteins : CluSTrQ9NX18
Domain families : Pfam (Sanger)Sdh5 (PF03937)   
Domain families : Pfam (NCBI)pfam03937   
DMDM Disease mutations54949
Blocks (Seattle)Q9NX18
Peptide AtlasQ9NX18
HPRD07915
IPIIPI00016443   IPI01015352   IPI01011066   IPI01011516   IPI01011370   IPI00978638   IPI01013539   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX18
IntAct (EBI)Q9NX18
BioGRIDSDHAF2
InParanoidQ9NX18
Interologous Interaction database Q9NX18
IntegromeDBSDHAF2
STRING (EMBL)SDHAF2
Ontologies - Pathways
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial electron transport, succinate to ubiquinone  protein dephosphorylation  negative regulation of epithelial to mesenchymal transition  protein-FAD linkage  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial electron transport, succinate to ubiquinone  protein dephosphorylation  negative regulation of epithelial to mesenchymal transition  protein-FAD linkage  negative regulation of canonical Wnt signaling pathway  
Protein Interaction DatabaseSDHAF2
Wikipedia pathwaysSDHAF2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SDHAF2
snp3D : Map Gene to Disease54949
SNP (GeneSNP Utah)SDHAF2
SNP : HGBaseSDHAF2
Genetic variants : HAPMAPSDHAF2
Exome VariantSDHAF2
1000_GenomesSDHAF2 
Cancer Gene: CensusSDHAF2 
Somatic Mutations in Cancer : COSMICSDHAF2 
CONAN: Copy Number AnalysisSDHAF2 
Mutations and Diseases : HGMDSDHAF2
Genomic VariantsSDHAF2  SDHAF2 [DGVbeta]
dbVarSDHAF2
ClinVarSDHAF2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601650    613019   
MedgenSDHAF2
GENETestsSDHAF2
Disease Genetic AssociationSDHAF2
Huge Navigator SDHAF2 [HugePedia]  SDHAF2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSDHAF2
Homology/Alignments : Family Browser (UCSC)SDHAF2
Phylogenetic Trees/Animal Genes : TreeFamSDHAF2
Chemical/Protein Interactions : CTD54949
Chemical/Pharm GKB GenePA165543618
Clinical trialSDHAF2
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineSDHAF2
iHOPSDHAF2
OncoSearchSDHAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:14:35 CEST 2014

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