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SENP3 (SUMO1/sentrin/SMT3 specific peptidase 3)

Identity

Other namesSMT3IP1
SSP3
Ulp1
HGNC (Hugo) SENP3
LocusID (NCBI) 26168
Location 17p13.1
Location_base_pair Starts at 7465309 and ends at 7475287 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SENP3   17862
Entrez_Gene (NCBI)SENP3  26168  SUMO1/sentrin/SMT3 specific peptidase 3
Cards
GeneCards (Weizmann)SENP3
Ensembl (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
AceView (NCBI)SENP3
Genatlas (Paris)SENP3
SOURCE (Stanford)NM_015670
Genomic and cartography
GoldenPath (UCSC)SENP3  -  17p13.1   chr17:7465309-7475287 +  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSENP3 - 17p13.1 [CytoView]
Mapping of homologs : NCBISENP3 [Mapview]
OMIM612844   
Gene and transcription
Genbank (Entrez)AF199459 AK000923 AL050283 AL557688 AL834294
RefSeq transcript (SRS)NM_015670
RefSeq transcript (Entrez)NM_015670
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004078090
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004078090
Consensus coding sequences : CCDS (NCBI)SENP3
Cluster EST : UnigeneHs.733104 [ SRS ] Hs.733104 [ NCBI ]
CGAP (NCI)Hs.733104
Alternative Splicing : Fast-db (Paris)GSHG0012198
Alternative Splicing GalleryENSG00000161956
Gene ExpressionSENP3 [ NCBI-GEO ]   SENP3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4L4 (SRS) Q9H4L4 (Uniprot)
NextProtQ9H4L4
With graphics : InterProQ9H4L4
Splice isoforms : SwissVarQ9H4L4(Swissvar)
Domaine pattern : Prosite (SRS)ULP_PROTEASE (PS50600)   
Domaine pattern : Prosite (Expaxy)ULP_PROTEASE (PS50600)   
Domains : Interpro (SRS)Peptidase_C48   
Domains : Interpro (EBI)Peptidase_C48   
Related proteins : CluSTrQ9H4L4
Domain families : Pfam (SRS)Peptidase_C48 (PF02902)   
Domain families : Pfam (Sanger)Peptidase_C48 (PF02902)   
Domain families : Pfam (NCBI)pfam02902   
DMDM26168
Blocks (Seattle)Q9H4L4
Human Protein AtlasENSG00000161956
HPRD08339
IPIIPI00171525   IPI00939968   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4L4
IntAct (EBI)Q9H4L4
FunCoupENSG00000161956
REACTOMESENP3
Protein Interaction Database26168
BioGRIDSENP3
InParanoidQ9H4L4
Interologous Interaction database Q9H4L4
IntegromeDBSENP3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SENP3
SNP (GeneSNP Utah)SENP3
SNP : HGBaseSENP3
Genetic variants : HAPMAPSENP3
Somatic Mutations in Cancer : COSMICSENP3 
CONAN: Copy Number AnalysisSENP3 
Mutations and Diseases : HGMDSENP3
OMIM612844   
GENETests612844   
Disease Genetic AssociationSENP3
Huge Navigator SENP3 [HugePedia]  SENP3 [HugeCancerGEM]
Genomic VariantsSENP3  SENP3 [DGVbeta]
ClinVarSENP3
snp3D : Map Gene to Disease26168
General knowledge
Homologs : HomoloGeneSENP3
Homology/Alignments : Family Browser (UCSC)SENP3
Phylogenetic Trees/Animal Genes : TreeFamSENP3
Catalytic activity : Enzyme3.4.22.68 [ Enzyme-Expasy ]   3.4.22.68 [ Enzyme-SRS ]   3.4.22.68 [ IntEnz-EBI ]   3.4.22.68 [ BRENDA ]   3.4.22.68 [ KEGG ]   
Chemical/Protein Interactions : CTD26168
Chemical/Pharm GKB GenePA134933213
Clinical trialSENP3
Cancer Resource (Charite)ENSG00000161956
Ontology : AmiGOubiquitin-specific protease activity  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Ontology : EGO-EBIubiquitin-specific protease activity  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
PubGeneSENP3
iHOPSENP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:41:42 CEST 2013
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