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SENP3 (SUMO1/sentrin/SMT3 specific peptidase 3)

Identity

Other namesSMT3IP1
SSP3
Ulp1
HGNC (Hugo) SENP3
LocusID (NCBI) 26168
Location 17p13.1
Location_base_pair Starts at 7465309 and ends at 7475287 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SENP3   17862
Cards
Entrez_Gene (NCBI)SENP3  26168  SUMO1/sentrin/SMT3 specific peptidase 3
GeneCards (Weizmann)SENP3
Ensembl hg19 (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
ICGC DataPortalENSG00000161956
cBioPortalSENP3
AceView (NCBI)SENP3
Genatlas (Paris)SENP3
WikiGenes26168
SOURCE (Princeton)SENP3
Genomic and cartography
GoldenPath hg19 (UCSC)SENP3  -     chr17:7465309-7475287 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SENP3  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSENP3 - 17p13.1 [CytoView hg19]  SENP3 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISENP3 [Mapview hg19]  SENP3 [Mapview hg38]
OMIM612844   
Gene and transcription
Genbank (Entrez)AF199459 AK000923 AL050283 AL557688 AL834294
RefSeq transcript (Entrez)NM_015670
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)SENP3
Cluster EST : UnigeneHs.733104 [ NCBI ]
CGAP (NCI)Hs.733104
Alternative Splicing : Fast-db (Paris)GSHG0012198
Alternative Splicing GalleryENSG00000161956
Gene ExpressionSENP3 [ NCBI-GEO ]     SENP3 [ SEEK ]   SENP3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4L4 (Uniprot)
NextProtQ9H4L4  [Medical]
With graphics : InterProQ9H4L4
Splice isoforms : SwissVarQ9H4L4 (Swissvar)
Catalytic activity : Enzyme3.4.22.68 [ Enzyme-Expasy ]   3.4.22.683.4.22.68 [ IntEnz-EBI ]   3.4.22.68 [ BRENDA ]   3.4.22.68 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ULP_PROTEASE (PS50600)   
Domains : Interpro (EBI)Peptidase_C48   
Related proteins : CluSTrQ9H4L4
Domain families : Pfam (Sanger)Peptidase_C48 (PF02902)   
Domain families : Pfam (NCBI)pfam02902   
DMDM Disease mutations26168
Blocks (Seattle)Q9H4L4
Human Protein AtlasENSG00000161956
Peptide AtlasQ9H4L4
HPRD08339
IPIIPI00171525   IPI00939968   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4L4
IntAct (EBI)Q9H4L4
FunCoupENSG00000161956
BioGRIDSENP3
IntegromeDBSENP3
STRING (EMBL)SENP3
Ontologies - Pathways
QuickGOQ9H4L4
Ontology : AmiGOubiquitin-specific protease activity  protein binding  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Ontology : EGO-EBIubiquitin-specific protease activity  protein binding  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Protein Interaction DatabaseSENP3
DoCM (Curated mutations)SENP3
Wikipedia pathwaysSENP3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSENP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SENP3
dbVarSENP3
ClinVarSENP3
1000_GenomesSENP3 
Exome Variant ServerSENP3
SNP (GeneSNP Utah)SENP3
SNP : HGBaseSENP3
Genetic variants : HAPMAPSENP3
Genomic VariantsSENP3  SENP3 [DGVbeta]
Mutations
ICGC Data PortalENSG00000161956 
Somatic Mutations in Cancer : COSMICSENP3 
CONAN: Copy Number AnalysisSENP3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:7465309-7475287
Mutations and Diseases : HGMDSENP3
OMIM612844   
MedgenSENP3
NextProtQ9H4L4 [Medical]
GENETestsSENP3
Disease Genetic AssociationSENP3
Huge Navigator SENP3 [HugePedia]  SENP3 [HugeCancerGEM]
snp3D : Map Gene to Disease26168
DGIdb (Drug Gene Interaction db)SENP3
General knowledge
Homologs : HomoloGeneSENP3
Homology/Alignments : Family Browser (UCSC)SENP3
Phylogenetic Trees/Animal Genes : TreeFamSENP3
Chemical/Protein Interactions : CTD26168
Chemical/Pharm GKB GenePA134933213
Clinical trialSENP3
Cancer Resource (Charite)ENSG00000161956
Other databases
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
CoreMineSENP3
GoPubMedSENP3
iHOPSENP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:21:42 CET 2014

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