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SENP3 (SUMO1/sentrin/SMT3 specific peptidase 3)

Identity

Other namesSMT3IP1
SSP3
Ulp1
HGNC (Hugo) SENP3
LocusID (NCBI) 26168
Location 17p13.1
Location_base_pair Starts at 7465309 and ends at 7475287 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SENP3   17862
Cards
Entrez_Gene (NCBI)SENP3  26168  SUMO1/sentrin/SMT3 specific peptidase 3
GeneCards (Weizmann)SENP3
Ensembl (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
ICGC DataPortalENSG00000161956
cBioPortalSENP3
AceView (NCBI)SENP3
Genatlas (Paris)SENP3
WikiGenes26168
SOURCE (Princeton)NM_015670
Genomic and cartography
GoldenPath (UCSC)SENP3  -  17p13.1   chr17:7465309-7475287 +  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSENP3 - 17p13.1 [CytoView]
Mapping of homologs : NCBISENP3 [Mapview]
OMIM612844   
Gene and transcription
Genbank (Entrez)AF199459 AK000923 AL050283 AL557688 AL834294
RefSeq transcript (Entrez)NM_015670
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)SENP3
Cluster EST : UnigeneHs.733104 [ NCBI ]
CGAP (NCI)Hs.733104
Alternative Splicing : Fast-db (Paris)GSHG0012198
Alternative Splicing GalleryENSG00000161956
Gene ExpressionSENP3 [ NCBI-GEO ]     SENP3 [ SEEK ]   SENP3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4L4 (Uniprot)
NextProtQ9H4L4  [Medical]
With graphics : InterProQ9H4L4
Splice isoforms : SwissVarQ9H4L4 (Swissvar)
Catalytic activity : Enzyme3.4.22.68 [ Enzyme-Expasy ]   3.4.22.683.4.22.68 [ IntEnz-EBI ]   3.4.22.68 [ BRENDA ]   3.4.22.68 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ULP_PROTEASE (PS50600)   
Domains : Interpro (EBI)Peptidase_C48 [organisation]  
Related proteins : CluSTrQ9H4L4
Domain families : Pfam (Sanger)Peptidase_C48 (PF02902)   
Domain families : Pfam (NCBI)pfam02902   
DMDM Disease mutations26168
Blocks (Seattle)Q9H4L4
Human Protein AtlasENSG00000161956 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9H4L4
HPRD08339
IPIIPI00171525   IPI00939968   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4L4
IntAct (EBI)Q9H4L4
FunCoupENSG00000161956
BioGRIDSENP3
InParanoidQ9H4L4
Interologous Interaction database Q9H4L4
IntegromeDBSENP3
STRING (EMBL)SENP3
Ontologies - Pathways
Ontology : AmiGOubiquitin-specific protease activity  protein binding  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Ontology : EGO-EBIubiquitin-specific protease activity  protein binding  nucleolus  cytoplasm  proteolysis  MLL1 complex  
Protein Interaction DatabaseSENP3
Wikipedia pathwaysSENP3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SENP3
snp3D : Map Gene to Disease26168
SNP (GeneSNP Utah)SENP3
SNP : HGBaseSENP3
Genetic variants : HAPMAPSENP3
Exome VariantSENP3
1000_GenomesSENP3 
ICGC programENSG00000161956 
Somatic Mutations in Cancer : COSMICSENP3 
CONAN: Copy Number AnalysisSENP3 
Mutations and Diseases : HGMDSENP3
Genomic VariantsSENP3  SENP3 [DGVbeta]
dbVarSENP3
ClinVarSENP3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM612844   
MedgenSENP3
GENETestsSENP3
Disease Genetic AssociationSENP3
Huge Navigator SENP3 [HugePedia]  SENP3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSENP3
Homology/Alignments : Family Browser (UCSC)SENP3
Phylogenetic Trees/Animal Genes : TreeFamSENP3
Chemical/Protein Interactions : CTD26168
Chemical/Pharm GKB GenePA134933213
Clinical trialSENP3
Cancer Resource (Charite)ENSG00000161956
Other databases
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
CoreMineSENP3
iHOPSENP3
OncoSearchSENP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:14:47 CEST 2014

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