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SENP3 (SUMO1/sentrin/SMT3 specific peptidase 3)

Identity

Alias_namesSUMO1/sentrin/SMT3 specific protease 3
Alias_symbol (synonym)DKFZP586K0919
SSP3
DKFZp762A152
SMT3IP1
Ulp1
HGNC (Hugo) SENP3
LocusID (NCBI) 26168
Atlas_Id 51505
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7465309 and ends at 7475287 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DYRK1B (19q13.2) / SENP3 (17p13.1)SENP3 (17p13.1) / DNAH2 (17p13.1)SENP3 (17p13.1) / GPS2 (17p13.1)
SENP3 (17p13.1) / SENP3 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SENP3   17862
Cards
Entrez_Gene (NCBI)SENP3  26168  SUMO1/sentrin/SMT3 specific peptidase 3
AliasesSMT3IP1; SSP3; Ulp1
GeneCards (Weizmann)SENP3
Ensembl hg19 (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161956 [Gene_View]  chr17:7465309-7475287 [Contig_View]  SENP3 [Vega]
ICGC DataPortalENSG00000161956
TCGA cBioPortalSENP3
AceView (NCBI)SENP3
Genatlas (Paris)SENP3
WikiGenes26168
SOURCE (Princeton)SENP3
Genetics Home Reference (NIH)SENP3
Genomic and cartography
GoldenPath hg19 (UCSC)SENP3  -     chr17:7465309-7475287 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SENP3  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSENP3 - 17p13.1 [CytoView hg19]  SENP3 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISENP3 [Mapview hg19]  SENP3 [Mapview hg38]
OMIM612844   
Gene and transcription
Genbank (Entrez)AF199459 AK000923 AL050283 AL557688 AL834294
RefSeq transcript (Entrez)NM_015670
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SENP3
Cluster EST : UnigeneHs.733104 [ NCBI ]
CGAP (NCI)Hs.733104
Alternative Splicing GalleryENSG00000161956
Gene ExpressionSENP3 [ NCBI-GEO ]   SENP3 [ EBI - ARRAY_EXPRESS ]   SENP3 [ SEEK ]   SENP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SENP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26168
GTEX Portal (Tissue expression)SENP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4L4
Splice isoforms : SwissVarQ9H4L4
Catalytic activity : Enzyme3.4.22.68 [ Enzyme-Expasy ]   3.4.22.683.4.22.68 [ IntEnz-EBI ]   3.4.22.68 [ BRENDA ]   3.4.22.68 [ KEGG ]   
PhosPhoSitePlusQ9H4L4
Domaine pattern : Prosite (Expaxy)ULP_PROTEASE (PS50600)   
Domains : Interpro (EBI)Peptidase_C48_C   
Domain families : Pfam (Sanger)Peptidase_C48 (PF02902)   
Domain families : Pfam (NCBI)pfam02902   
Conserved Domain (NCBI)SENP3
DMDM Disease mutations26168
Blocks (Seattle)SENP3
SuperfamilyQ9H4L4
Human Protein AtlasENSG00000161956
Peptide AtlasQ9H4L4
HPRD08339
IPIIPI00171525   IPI00939968   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4L4
IntAct (EBI)Q9H4L4
FunCoupENSG00000161956
BioGRIDSENP3
STRING (EMBL)SENP3
ZODIACSENP3
Ontologies - Pathways
QuickGOQ9H4L4
Ontology : AmiGOendopeptidase activity  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  rRNA processing  protein desumoylation  SUMO-specific protease activity  MLL1 complex  
Ontology : EGO-EBIendopeptidase activity  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  rRNA processing  protein desumoylation  SUMO-specific protease activity  MLL1 complex  
NDEx NetworkSENP3
Atlas of Cancer Signalling NetworkSENP3
Wikipedia pathwaysSENP3
Orthology - Evolution
OrthoDB26168
GeneTree (enSembl)ENSG00000161956
Phylogenetic Trees/Animal Genes : TreeFamSENP3
HOVERGENQ9H4L4
HOGENOMQ9H4L4
Homologs : HomoloGeneSENP3
Homology/Alignments : Family Browser (UCSC)SENP3
Gene fusions - Rearrangements
Fusion : MitelmanSENP3/GPS2 [17p13.1/17p13.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSENP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SENP3
dbVarSENP3
ClinVarSENP3
1000_GenomesSENP3 
Exome Variant ServerSENP3
ExAC (Exome Aggregation Consortium)SENP3 (select the gene name)
Genetic variants : HAPMAP26168
Genomic Variants (DGV)SENP3 [DGVbeta]
DECIPHER (Syndromes)17:7465309-7475287  ENSG00000161956
CONAN: Copy Number AnalysisSENP3 
Mutations
ICGC Data PortalSENP3 
TCGA Data PortalSENP3 
Broad Tumor PortalSENP3
OASIS PortalSENP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSENP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSENP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SENP3
DgiDB (Drug Gene Interaction Database)SENP3
DoCM (Curated mutations)SENP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SENP3 (select a term)
intoGenSENP3
Cancer3DSENP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612844   
Orphanet
MedgenSENP3
Genetic Testing Registry SENP3
NextProtQ9H4L4 [Medical]
TSGene26168
GENETestsSENP3
Huge Navigator SENP3 [HugePedia]
snp3D : Map Gene to Disease26168
BioCentury BCIQSENP3
ClinGenSENP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26168
Chemical/Pharm GKB GenePA134933213
Clinical trialSENP3
Miscellaneous
canSAR (ICR)SENP3 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSENP3
EVEXSENP3
GoPubMedSENP3
iHOPSENP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:50:57 CET 2016

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