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SERTM2 (serine rich and transmembrane domain containing 2)

Identity

Other aliasDKFZp686D0853
LINC00890
HGNC (Hugo) SERTM2
LocusID (NCBI) 401613
Atlas_Id 80304
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111511662 and ends at 111522399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SERTM2   48576
Cards
Entrez_Gene (NCBI)SERTM2  401613  serine rich and transmembrane domain containing 2
AliasesDKFZp686D0853; LINC00890
GeneCards (Weizmann)SERTM2
Ensembl hg19 (Hinxton)ENSG00000260802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260802 [Gene_View]  ENSG00000260802 [Sequence]  chrX:111511662-111522399 [Contig_View]  SERTM2 [Vega]
ICGC DataPortalENSG00000260802
TCGA cBioPortalSERTM2
AceView (NCBI)SERTM2
Genatlas (Paris)SERTM2
WikiGenes401613
SOURCE (Princeton)SERTM2
Genetics Home Reference (NIH)SERTM2
Genomic and cartography
GoldenPath hg38 (UCSC)SERTM2  -     chrX:111511662-111522399 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SERTM2  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathSERTM2 - Xq23 [CytoView hg19]  SERTM2 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000260802
Mapping of homologs : NCBISERTM2 [Mapview hg19]  SERTM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA429445 BX537697 BY994992 DR005240
RefSeq transcript (Entrez)NM_001354473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SERTM2
Cluster EST : UnigeneHs.98581 [ NCBI ]
CGAP (NCI)Hs.98581
Alternative Splicing GalleryENSG00000260802
Gene ExpressionSERTM2 [ NCBI-GEO ]   SERTM2 [ EBI - ARRAY_EXPRESS ]   SERTM2 [ SEEK ]   SERTM2 [ MEM ]
Gene Expression Viewer (FireBrowse)SERTM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401613
GTEX Portal (Tissue expression)SERTM2
Human Protein AtlasENSG00000260802-SERTM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SERTM2
DMDM Disease mutations401613
Blocks (Seattle)SERTM2
Human Protein Atlas [tissue]ENSG00000260802-SERTM2 [tissue]
IPIIPI00783957   
Protein Interaction databases
FunCoupENSG00000260802
BioGRIDSERTM2
STRING (EMBL)SERTM2
ZODIACSERTM2
Ontologies - Pathways
Huge Navigator SERTM2 [HugePedia]
snp3D : Map Gene to Disease401613
BioCentury BCIQSERTM2
ClinGenSERTM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401613
Clinical trialSERTM2
Miscellaneous
canSAR (ICR)SERTM2 (select the gene name)
DataMed IndexSERTM2
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSERTM2
EVEXSERTM2
GoPubMedSERTM2
iHOPSERTM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:04:59 CEST 2019

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