Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHISAL1 (shisa like 1)

Identity

Other aliasKIAA1644
HGNC (Hugo) SHISAL1
LocusID (NCBI) 85352
Atlas_Id 80473
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 44243677 and ends at 44312851 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SHISAL1   29335
Cards
Entrez_Gene (NCBI)SHISAL1  85352  shisa like 1
AliasesKIAA1644
GeneCards (Weizmann)SHISAL1
Ensembl hg19 (Hinxton)ENSG00000138944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138944 [Gene_View]  ENSG00000138944 [Sequence]  chr22:44243677-44312851 [Contig_View]  SHISAL1 [Vega]
ICGC DataPortalENSG00000138944
TCGA cBioPortalSHISAL1
AceView (NCBI)SHISAL1
Genatlas (Paris)SHISAL1
WikiGenes85352
SOURCE (Princeton)SHISAL1
Genetics Home Reference (NIH)SHISAL1
Genomic and cartography
GoldenPath hg38 (UCSC)SHISAL1  -     chr22:44243677-44312851 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISAL1  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathSHISAL1 - 22q13.31 [CytoView hg19]  SHISAL1 - 22q13.31 [CytoView hg38]
ImmunoBaseENSG00000138944
Mapping of homologs : NCBISHISAL1 [Mapview hg19]  SHISAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051431 AK090953 BC068280 BC104183 BC104184
RefSeq transcript (Entrez)NM_001099294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISAL1
Cluster EST : UnigeneHs.6829 [ NCBI ]
CGAP (NCI)Hs.6829
Alternative Splicing GalleryENSG00000138944
Gene ExpressionSHISAL1 [ NCBI-GEO ]   SHISAL1 [ EBI - ARRAY_EXPRESS ]   SHISAL1 [ SEEK ]   SHISAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85352
GTEX Portal (Tissue expression)SHISAL1
Human Protein AtlasENSG00000138944-SHISAL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXP7
Splice isoforms : SwissVarQ3SXP7
PhosPhoSitePlusQ3SXP7
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHISAL1
DMDM Disease mutations85352
Blocks (Seattle)SHISAL1
SuperfamilyQ3SXP7
Human Protein Atlas [tissue]ENSG00000138944-SHISAL1 [tissue]
Peptide AtlasQ3SXP7
IPIIPI00400895   IPI00742749   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXP7
IntAct (EBI)Q3SXP7
FunCoupENSG00000138944
BioGRIDSHISAL1
STRING (EMBL)SHISAL1
ZODIACSHISAL1
Ontologies - Pathways
QuickGOQ3SXP7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSHISAL1
Atlas of Cancer Signalling NetworkSHISAL1
Wikipedia pathwaysSHISAL1
Orthology - Evolution
OrthoDB85352
GeneTree (enSembl)ENSG00000138944
Phylogenetic Trees/Animal Genes : TreeFamSHISAL1
HOGENOMQ3SXP7
Homologs : HomoloGeneSHISAL1
Homology/Alignments : Family Browser (UCSC)SHISAL1
Gene fusions - Rearrangements
Fusion : QuiverSHISAL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISAL1
dbVarSHISAL1
ClinVarSHISAL1
1000_GenomesSHISAL1 
Exome Variant ServerSHISAL1
ExAC (Exome Aggregation Consortium)ENSG00000138944
GNOMAD BrowserENSG00000138944
Varsome BrowserSHISAL1
Genetic variants : HAPMAP85352
Genomic Variants (DGV)SHISAL1 [DGVbeta]
DECIPHERSHISAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISAL1 
Mutations
ICGC Data PortalSHISAL1 
TCGA Data PortalSHISAL1 
Broad Tumor PortalSHISAL1
OASIS PortalSHISAL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSHISAL1
BioMutasearch SHISAL1
DgiDB (Drug Gene Interaction Database)SHISAL1
DoCM (Curated mutations)SHISAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISAL1 (select a term)
intoGenSHISAL1
Cancer3DSHISAL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSHISAL1
MedgenSHISAL1
Genetic Testing Registry SHISAL1
NextProtQ3SXP7 [Medical]
TSGene85352
GENETestsSHISAL1
Target ValidationSHISAL1
Huge Navigator SHISAL1 [HugePedia]
snp3D : Map Gene to Disease85352
BioCentury BCIQSHISAL1
ClinGenSHISAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85352
Chemical/Pharm GKB GenePA164721896
Clinical trialSHISAL1
Miscellaneous
canSAR (ICR)SHISAL1 (select the gene name)
DataMed IndexSHISAL1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISAL1
EVEXSHISAL1
GoPubMedSHISAL1
iHOPSHISAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 7 17:46:14 CEST 2019

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