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SHISAL2A (shisa like 2A)

Identity

Other aliasFAM159A
PRO7171
WWLS2783
HGNC (Hugo) SHISAL2A
LocusID (NCBI) 348378
Atlas_Id 80590
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52633344 and ends at 52657065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SHISAL2A   28757
Cards
Entrez_Gene (NCBI)SHISAL2A  348378  shisa like 2A
AliasesFAM159A; PRO7171; WWLS2783
GeneCards (Weizmann)SHISAL2A
Ensembl hg19 (Hinxton)ENSG00000182183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182183 [Gene_View]  ENSG00000182183 [Sequence]  chr1:52633344-52657065 [Contig_View]  SHISAL2A [Vega]
ICGC DataPortalENSG00000182183
TCGA cBioPortalSHISAL2A
AceView (NCBI)SHISAL2A
Genatlas (Paris)SHISAL2A
WikiGenes348378
SOURCE (Princeton)SHISAL2A
Genetics Home Reference (NIH)SHISAL2A
Genomic and cartography
GoldenPath hg38 (UCSC)SHISAL2A  -     chr1:52633344-52657065 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISAL2A  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathSHISAL2A - 1p32.3 [CytoView hg19]  SHISAL2A - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000182183
Mapping of homologs : NCBISHISAL2A [Mapview hg19]  SHISAL2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ573663 AK128236 AY358621 BC041608 BG192125
RefSeq transcript (Entrez)NM_001042693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISAL2A
Cluster EST : UnigeneHs.424589 [ NCBI ]
CGAP (NCI)Hs.424589
Alternative Splicing GalleryENSG00000182183
Gene ExpressionSHISAL2A [ NCBI-GEO ]   SHISAL2A [ EBI - ARRAY_EXPRESS ]   SHISAL2A [ SEEK ]   SHISAL2A [ MEM ]
Gene Expression Viewer (FireBrowse)SHISAL2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348378
GTEX Portal (Tissue expression)SHISAL2A
Human Protein AtlasENSG00000182183-SHISAL2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWV7
Splice isoforms : SwissVarQ6UWV7
PhosPhoSitePlusQ6UWV7
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHISAL2A
DMDM Disease mutations348378
Blocks (Seattle)SHISAL2A
SuperfamilyQ6UWV7
Human Protein Atlas [tissue]ENSG00000182183-SHISAL2A [tissue]
Peptide AtlasQ6UWV7
IPIIPI00743798   IPI00884943   IPI00984659   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWV7
IntAct (EBI)Q6UWV7
FunCoupENSG00000182183
BioGRIDSHISAL2A
STRING (EMBL)SHISAL2A
ZODIACSHISAL2A
Ontologies - Pathways
QuickGOQ6UWV7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSHISAL2A
Atlas of Cancer Signalling NetworkSHISAL2A
Wikipedia pathwaysSHISAL2A
Orthology - Evolution
OrthoDB348378
GeneTree (enSembl)ENSG00000182183
Phylogenetic Trees/Animal Genes : TreeFamSHISAL2A
HOGENOMQ6UWV7
Homologs : HomoloGeneSHISAL2A
Homology/Alignments : Family Browser (UCSC)SHISAL2A
Gene fusions - Rearrangements
Fusion : QuiverSHISAL2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISAL2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISAL2A
dbVarSHISAL2A
ClinVarSHISAL2A
1000_GenomesSHISAL2A 
Exome Variant ServerSHISAL2A
ExAC (Exome Aggregation Consortium)ENSG00000182183
GNOMAD BrowserENSG00000182183
Varsome BrowserSHISAL2A
Genetic variants : HAPMAP348378
Genomic Variants (DGV)SHISAL2A [DGVbeta]
DECIPHERSHISAL2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISAL2A 
Mutations
ICGC Data PortalSHISAL2A 
TCGA Data PortalSHISAL2A 
Broad Tumor PortalSHISAL2A
OASIS PortalSHISAL2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSHISAL2A
BioMutasearch SHISAL2A
DgiDB (Drug Gene Interaction Database)SHISAL2A
DoCM (Curated mutations)SHISAL2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISAL2A (select a term)
intoGenSHISAL2A
Cancer3DSHISAL2A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSHISAL2A
MedgenSHISAL2A
Genetic Testing Registry SHISAL2A
NextProtQ6UWV7 [Medical]
TSGene348378
GENETestsSHISAL2A
Target ValidationSHISAL2A
Huge Navigator SHISAL2A [HugePedia]
snp3D : Map Gene to Disease348378
BioCentury BCIQSHISAL2A
ClinGenSHISAL2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348378
Chemical/Pharm GKB GenePA162386717
Clinical trialSHISAL2A
Miscellaneous
canSAR (ICR)SHISAL2A (select the gene name)
DataMed IndexSHISAL2A
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISAL2A
EVEXSHISAL2A
GoPubMedSHISAL2A
iHOPSHISAL2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:05:11 CEST 2019

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