Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHISAL2B (shisa like 2B)

Identity

Other aliasFAM159B
HGNC (Hugo) SHISAL2B
LocusID (NCBI) 100132916
Atlas_Id 80358
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64690308 and ends at 64718190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SHISAL2B   34236
Cards
Entrez_Gene (NCBI)SHISAL2B  100132916  shisa like 2B
AliasesFAM159B
GeneCards (Weizmann)SHISAL2B
Ensembl hg19 (Hinxton)ENSG00000145642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145642 [Gene_View]  ENSG00000145642 [Sequence]  chr5:64690308-64718190 [Contig_View]  SHISAL2B [Vega]
ICGC DataPortalENSG00000145642
TCGA cBioPortalSHISAL2B
AceView (NCBI)SHISAL2B
Genatlas (Paris)SHISAL2B
WikiGenes100132916
SOURCE (Princeton)SHISAL2B
Genetics Home Reference (NIH)SHISAL2B
Genomic and cartography
GoldenPath hg38 (UCSC)SHISAL2B  -     chr5:64690308-64718190 +  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISAL2B  -     5q12.3   [Description]    (hg19-Feb_2009)
GoldenPathSHISAL2B - 5q12.3 [CytoView hg19]  SHISAL2B - 5q12.3 [CytoView hg38]
ImmunoBaseENSG00000145642
Mapping of homologs : NCBISHISAL2B [Mapview hg19]  SHISAL2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ271827 BU785751 BU952508
RefSeq transcript (Entrez)NM_001164442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISAL2B
Alternative Splicing GalleryENSG00000145642
Gene ExpressionSHISAL2B [ NCBI-GEO ]   SHISAL2B [ EBI - ARRAY_EXPRESS ]   SHISAL2B [ SEEK ]   SHISAL2B [ MEM ]
Gene Expression Viewer (FireBrowse)SHISAL2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100132916
GTEX Portal (Tissue expression)SHISAL2B
Human Protein AtlasENSG00000145642-SHISAL2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHISAL2B
DMDM Disease mutations100132916
Blocks (Seattle)SHISAL2B
Human Protein Atlas [tissue]ENSG00000145642-SHISAL2B [tissue]
IPIIPI00737348   IPI00963873   
Protein Interaction databases
FunCoupENSG00000145642
BioGRIDSHISAL2B
STRING (EMBL)SHISAL2B
ZODIACSHISAL2B
Ontologies - Pathways
Huge Navigator SHISAL2B [HugePedia]
snp3D : Map Gene to Disease100132916
BioCentury BCIQSHISAL2B
ClinGenSHISAL2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132916
Chemical/Pharm GKB GenePA162386728
Clinical trialSHISAL2B
Miscellaneous
canSAR (ICR)SHISAL2B (select the gene name)
HarmonizomeSHISAL2B
DataMed IndexSHISAL2B
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISAL2B
EVEXSHISAL2B
GoPubMedSHISAL2B
iHOPSHISAL2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 20:28:23 CET 2020

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