Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC29A2 (solute carrier family 29 member 2)

Identity

Alias_namesENT2
HNP36
solute carrier family 29 (equilibrative nucleoside transporter), member 2
Alias_symbol (synonym)DER12
Other alias
HGNC (Hugo) SLC29A2
LocusID (NCBI) 3177
Atlas_Id 46539
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66362521 and ends at 66371820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC29A2   11004
Cards
Entrez_Gene (NCBI)SLC29A2  3177  solute carrier family 29 member 2
AliasesDER12; ENT2; HNP36
GeneCards (Weizmann)SLC29A2
Ensembl hg19 (Hinxton)ENSG00000174669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174669 [Gene_View]  ENSG00000174669 [Sequence]  chr11:66362521-66371820 [Contig_View]  SLC29A2 [Vega]
ICGC DataPortalENSG00000174669
TCGA cBioPortalSLC29A2
AceView (NCBI)SLC29A2
Genatlas (Paris)SLC29A2
WikiGenes3177
SOURCE (Princeton)SLC29A2
Genetics Home Reference (NIH)SLC29A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC29A2  -     chr11:66362521-66371820 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC29A2  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC29A2 - 11q13.2 [CytoView hg19]  SLC29A2 - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000174669
Mapping of homologs : NCBISLC29A2 [Mapview hg19]  SLC29A2 [Mapview hg38]
OMIM602110   
Gene and transcription
Genbank (Entrez)AF029358 AF034102 AF401235 AK057041 BC011387
RefSeq transcript (Entrez)NM_001300868 NM_001300869 NM_001532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC29A2
Cluster EST : UnigeneHs.736345 [ NCBI ]
CGAP (NCI)Hs.736345
Alternative Splicing GalleryENSG00000174669
Gene ExpressionSLC29A2 [ NCBI-GEO ]   SLC29A2 [ EBI - ARRAY_EXPRESS ]   SLC29A2 [ SEEK ]   SLC29A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC29A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3177
GTEX Portal (Tissue expression)SLC29A2
Human Protein AtlasENSG00000174669-SLC29A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14542
Splice isoforms : SwissVarQ14542
PhosPhoSitePlusQ14542
Domains : Interpro (EBI)ENT1/ENT2    ENT2    Eqnu_transpt    MFS_trans_sf   
Domain families : Pfam (Sanger)Nucleoside_tran (PF01733)   
Domain families : Pfam (NCBI)pfam01733   
Conserved Domain (NCBI)SLC29A2
DMDM Disease mutations3177
Blocks (Seattle)SLC29A2
SuperfamilyQ14542
Human Protein Atlas [tissue]ENSG00000174669-SLC29A2 [tissue]
Peptide AtlasQ14542
HPRD03662
IPIIPI00031456   IPI00220195   IPI00978970   IPI00336165   
Protein Interaction databases
DIP (DOE-UCLA)Q14542
IntAct (EBI)Q14542
FunCoupENSG00000174669
BioGRIDSLC29A2
STRING (EMBL)SLC29A2
ZODIACSLC29A2
Ontologies - Pathways
QuickGOQ14542
Ontology : AmiGOnucleoside transmembrane transporter activity  nucleolus  plasma membrane  plasma membrane  integral component of plasma membrane  nucleobase-containing compound metabolic process  adenine transport  guanine transport  nucleoside transport  uridine transport  basolateral plasma membrane  basolateral plasma membrane  nuclear membrane  hypoxanthine transport  thymine transport  presynapse  neurotransmitter reuptake  nucleoside transmembrane transport  
Ontology : EGO-EBInucleoside transmembrane transporter activity  nucleolus  plasma membrane  plasma membrane  integral component of plasma membrane  nucleobase-containing compound metabolic process  adenine transport  guanine transport  nucleoside transport  uridine transport  basolateral plasma membrane  basolateral plasma membrane  nuclear membrane  hypoxanthine transport  thymine transport  presynapse  neurotransmitter reuptake  nucleoside transmembrane transport  
NDEx NetworkSLC29A2
Atlas of Cancer Signalling NetworkSLC29A2
Wikipedia pathwaysSLC29A2
Orthology - Evolution
OrthoDB3177
GeneTree (enSembl)ENSG00000174669
Phylogenetic Trees/Animal Genes : TreeFamSLC29A2
HOGENOMQ14542
Homologs : HomoloGeneSLC29A2
Homology/Alignments : Family Browser (UCSC)SLC29A2
Gene fusions - Rearrangements
Fusion : QuiverSLC29A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC29A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC29A2
dbVarSLC29A2
ClinVarSLC29A2
1000_GenomesSLC29A2 
Exome Variant ServerSLC29A2
ExAC (Exome Aggregation Consortium)ENSG00000174669
GNOMAD BrowserENSG00000174669
Varsome BrowserSLC29A2
Genetic variants : HAPMAP3177
Genomic Variants (DGV)SLC29A2 [DGVbeta]
DECIPHERSLC29A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC29A2 
Mutations
ICGC Data PortalSLC29A2 
TCGA Data PortalSLC29A2 
Broad Tumor PortalSLC29A2
OASIS PortalSLC29A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC29A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC29A2
Mutations and Diseases : HGMDSLC29A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC29A2
DgiDB (Drug Gene Interaction Database)SLC29A2
DoCM (Curated mutations)SLC29A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC29A2 (select a term)
intoGenSLC29A2
Cancer3DSLC29A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602110   
Orphanet
DisGeNETSLC29A2
MedgenSLC29A2
Genetic Testing Registry SLC29A2
NextProtQ14542 [Medical]
TSGene3177
GENETestsSLC29A2
Target ValidationSLC29A2
Huge Navigator SLC29A2 [HugePedia]
snp3D : Map Gene to Disease3177
BioCentury BCIQSLC29A2
ClinGenSLC29A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3177
Chemical/Pharm GKB GenePA191
Clinical trialSLC29A2
Miscellaneous
canSAR (ICR)SLC29A2 (select the gene name)
DataMed IndexSLC29A2
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC29A2
EVEXSLC29A2
GoPubMedSLC29A2
iHOPSLC29A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:07:57 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.