Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC30A1 (solute carrier family 30 member 1)

Identity

Alias_namesZNT1
solute carrier family 30 (zinc transporter), member 1
Alias_symbol (synonym)ZRC1
Other alias
HGNC (Hugo) SLC30A1
LocusID (NCBI) 7779
Atlas_Id 50685
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 211575039 and ends at 211578757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A1   11012
Cards
Entrez_Gene (NCBI)SLC30A1  7779  solute carrier family 30 member 1
AliasesZNT1; ZRC1
GeneCards (Weizmann)SLC30A1
Ensembl hg19 (Hinxton)ENSG00000170385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170385 [Gene_View]  ENSG00000170385 [Sequence]  chr1:211575039-211578757 [Contig_View]  SLC30A1 [Vega]
ICGC DataPortalENSG00000170385
TCGA cBioPortalSLC30A1
AceView (NCBI)SLC30A1
Genatlas (Paris)SLC30A1
WikiGenes7779
SOURCE (Princeton)SLC30A1
Genetics Home Reference (NIH)SLC30A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A1  -     chr1:211575039-211578757 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A1  -     1q32.3   [Description]    (hg19-Feb_2009)
GoldenPathSLC30A1 - 1q32.3 [CytoView hg19]  SLC30A1 - 1q32.3 [CytoView hg38]
ImmunoBaseENSG00000170385
Mapping of homologs : NCBISLC30A1 [Mapview hg19]  SLC30A1 [Mapview hg38]
OMIM609521   
Gene and transcription
Genbank (Entrez)AA853540 AB451467 AF364518 AI467909 AI621266
RefSeq transcript (Entrez)NM_021194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A1
Cluster EST : UnigeneHs.519469 [ NCBI ]
CGAP (NCI)Hs.519469
Alternative Splicing GalleryENSG00000170385
Gene ExpressionSLC30A1 [ NCBI-GEO ]   SLC30A1 [ EBI - ARRAY_EXPRESS ]   SLC30A1 [ SEEK ]   SLC30A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7779
GTEX Portal (Tissue expression)SLC30A1
Human Protein AtlasENSG00000170385-SLC30A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6M5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6M5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6M5
Splice isoforms : SwissVarQ9Y6M5
PhosPhoSitePlusQ9Y6M5
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_CTD_sf    Cation_efflux_TMD_sf   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A1
DMDM Disease mutations7779
Blocks (Seattle)SLC30A1
SuperfamilyQ9Y6M5
Human Protein Atlas [tissue]ENSG00000170385-SLC30A1 [tissue]
Peptide AtlasQ9Y6M5
HPRD15366
IPIIPI00002483   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6M5
IntAct (EBI)Q9Y6M5
FunCoupENSG00000170385
BioGRIDSLC30A1
STRING (EMBL)SLC30A1
ZODIACSLC30A1
Ontologies - Pathways
QuickGOQ9Y6M5
Ontology : AmiGOin utero embryonic development  zinc ion transmembrane transporter activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  plasma membrane  plasma membrane  plasma membrane  zinc ion transport  cellular calcium ion homeostasis  cellular zinc ion homeostasis  calcium channel inhibitor activity  calcium channel inhibitor activity  T-tubule  nuclear membrane  negative regulation of neurotransmitter secretion  calcium ion import  cadmium ion transmembrane transport  zinc ion transmembrane transport  negative regulation of zinc ion transmembrane import  detoxification of cadmium ion  negative regulation of calcium ion import  Schaffer collateral - CA1 synapse  integral component of postsynaptic density membrane  
Ontology : EGO-EBIin utero embryonic development  zinc ion transmembrane transporter activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  plasma membrane  plasma membrane  plasma membrane  zinc ion transport  cellular calcium ion homeostasis  cellular zinc ion homeostasis  calcium channel inhibitor activity  calcium channel inhibitor activity  T-tubule  nuclear membrane  negative regulation of neurotransmitter secretion  calcium ion import  cadmium ion transmembrane transport  zinc ion transmembrane transport  negative regulation of zinc ion transmembrane import  detoxification of cadmium ion  negative regulation of calcium ion import  Schaffer collateral - CA1 synapse  integral component of postsynaptic density membrane  
Pathways : KEGGMineral absorption   
NDEx NetworkSLC30A1
Atlas of Cancer Signalling NetworkSLC30A1
Wikipedia pathwaysSLC30A1
Orthology - Evolution
OrthoDB7779
GeneTree (enSembl)ENSG00000170385
Phylogenetic Trees/Animal Genes : TreeFamSLC30A1
HOGENOMQ9Y6M5
Homologs : HomoloGeneSLC30A1
Homology/Alignments : Family Browser (UCSC)SLC30A1
Gene fusions - Rearrangements
Fusion : QuiverSLC30A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A1
dbVarSLC30A1
ClinVarSLC30A1
1000_GenomesSLC30A1 
Exome Variant ServerSLC30A1
ExAC (Exome Aggregation Consortium)ENSG00000170385
GNOMAD BrowserENSG00000170385
Varsome BrowserSLC30A1
Genetic variants : HAPMAP7779
Genomic Variants (DGV)SLC30A1 [DGVbeta]
DECIPHERSLC30A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A1 
Mutations
ICGC Data PortalSLC30A1 
TCGA Data PortalSLC30A1 
Broad Tumor PortalSLC30A1
OASIS PortalSLC30A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC30A1
Mutations and Diseases : HGMDSLC30A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A1
DgiDB (Drug Gene Interaction Database)SLC30A1
DoCM (Curated mutations)SLC30A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A1 (select a term)
intoGenSLC30A1
Cancer3DSLC30A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609521   
Orphanet
DisGeNETSLC30A1
MedgenSLC30A1
Genetic Testing Registry SLC30A1
NextProtQ9Y6M5 [Medical]
TSGene7779
GENETestsSLC30A1
Target ValidationSLC30A1
Huge Navigator SLC30A1 [HugePedia]
snp3D : Map Gene to Disease7779
BioCentury BCIQSLC30A1
ClinGenSLC30A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7779
Chemical/Pharm GKB GenePA35882
Clinical trialSLC30A1
Miscellaneous
canSAR (ICR)SLC30A1 (select the gene name)
DataMed IndexSLC30A1
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A1
EVEXSLC30A1
GoPubMedSLC30A1
iHOPSLC30A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:08:01 CET 2019

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