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SLC30A10 (solute carrier family 30 member 10)

Identity

Alias_namessolute carrier family 30, member 10
Alias_symbol (synonym)DKFZp547M236
ZnT-10
ZRC1
ZNT8
Other aliasHMDPC
HMNDYT1
ZNT10
HGNC (Hugo) SLC30A10
LocusID (NCBI) 55532
Atlas_Id 56571
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 219914264 and ends at 219928651 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A10   25355
Cards
Entrez_Gene (NCBI)SLC30A10  55532  solute carrier family 30 member 10
AliasesHMDPC; HMNDYT1; ZNT10; ZNT8; 
ZRC1; ZnT-10
GeneCards (Weizmann)SLC30A10
Ensembl hg19 (Hinxton)ENSG00000196660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196660 [Gene_View]  ENSG00000196660 [Sequence]  chr1:219914264-219928651 [Contig_View]  SLC30A10 [Vega]
ICGC DataPortalENSG00000196660
TCGA cBioPortalSLC30A10
AceView (NCBI)SLC30A10
Genatlas (Paris)SLC30A10
WikiGenes55532
SOURCE (Princeton)SLC30A10
Genetics Home Reference (NIH)SLC30A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A10  -     chr1:219914264-219928651 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A10  -     1q41   [Description]    (hg19-Feb_2009)
GoldenPathSLC30A10 - 1q41 [CytoView hg19]  SLC30A10 - 1q41 [CytoView hg38]
ImmunoBaseENSG00000196660
Mapping of homologs : NCBISLC30A10 [Mapview hg19]  SLC30A10 [Mapview hg38]
OMIM611146   613280   
Gene and transcription
Genbank (Entrez)AK090806 AL359609 AY212919 BC036078 BG564297
RefSeq transcript (Entrez)NM_001004433 NM_018713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A10
Cluster EST : UnigeneHs.284450 [ NCBI ]
CGAP (NCI)Hs.284450
Alternative Splicing GalleryENSG00000196660
Gene ExpressionSLC30A10 [ NCBI-GEO ]   SLC30A10 [ EBI - ARRAY_EXPRESS ]   SLC30A10 [ SEEK ]   SLC30A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55532
GTEX Portal (Tissue expression)SLC30A10
Human Protein AtlasENSG00000196660-SLC30A10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XR72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XR72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XR72
Splice isoforms : SwissVarQ6XR72
PhosPhoSitePlusQ6XR72
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD_sf   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A10
DMDM Disease mutations55532
Blocks (Seattle)SLC30A10
SuperfamilyQ6XR72
Human Protein Atlas [tissue]ENSG00000196660-SLC30A10 [tissue]
Peptide AtlasQ6XR72
HPRD15367
IPIIPI00873331   IPI00876859   IPI00747386   IPI00000012   
Protein Interaction databases
DIP (DOE-UCLA)Q6XR72
IntAct (EBI)Q6XR72
FunCoupENSG00000196660
BioGRIDSLC30A10
STRING (EMBL)SLC30A10
ZODIACSLC30A10
Ontologies - Pathways
QuickGOQ6XR72
Ontology : AmiGOmanganese ion transmembrane transporter activity  protein binding  early endosome  Golgi apparatus  plasma membrane  plasma membrane  manganese ion transport  zinc ion transport  epidermal growth factor receptor signaling pathway  integral component of membrane  negative regulation of neuron apoptotic process  recycling endosome  positive regulation of ERK1 and ERK2 cascade  manganese ion transmembrane transport  regulation of zinc ion transport  negative regulation of reactive oxygen species biosynthetic process  cellular response to angiotensin  regulation of cellular response to manganese ion  negative regulation of cellular senescence  
Ontology : EGO-EBImanganese ion transmembrane transporter activity  protein binding  early endosome  Golgi apparatus  plasma membrane  plasma membrane  manganese ion transport  zinc ion transport  epidermal growth factor receptor signaling pathway  integral component of membrane  negative regulation of neuron apoptotic process  recycling endosome  positive regulation of ERK1 and ERK2 cascade  manganese ion transmembrane transport  regulation of zinc ion transport  negative regulation of reactive oxygen species biosynthetic process  cellular response to angiotensin  regulation of cellular response to manganese ion  negative regulation of cellular senescence  
NDEx NetworkSLC30A10
Atlas of Cancer Signalling NetworkSLC30A10
Wikipedia pathwaysSLC30A10
Orthology - Evolution
OrthoDB55532
GeneTree (enSembl)ENSG00000196660
Phylogenetic Trees/Animal Genes : TreeFamSLC30A10
HOGENOMQ6XR72
Homologs : HomoloGeneSLC30A10
Homology/Alignments : Family Browser (UCSC)SLC30A10
Gene fusions - Rearrangements
Fusion : QuiverSLC30A10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A10
dbVarSLC30A10
ClinVarSLC30A10
1000_GenomesSLC30A10 
Exome Variant ServerSLC30A10
ExAC (Exome Aggregation Consortium)ENSG00000196660
GNOMAD BrowserENSG00000196660
Varsome BrowserSLC30A10
Genetic variants : HAPMAP55532
Genomic Variants (DGV)SLC30A10 [DGVbeta]
DECIPHERSLC30A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A10 
Mutations
ICGC Data PortalSLC30A10 
TCGA Data PortalSLC30A10 
Broad Tumor PortalSLC30A10
OASIS PortalSLC30A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC30A10
Mutations and Diseases : HGMDSLC30A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch SLC30A10
DgiDB (Drug Gene Interaction Database)SLC30A10
DoCM (Curated mutations)SLC30A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A10 (select a term)
intoGenSLC30A10
Cancer3DSLC30A10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611146    613280   
Orphanet21405   
DisGeNETSLC30A10
MedgenSLC30A10
Genetic Testing Registry SLC30A10
NextProtQ6XR72 [Medical]
TSGene55532
GENETestsSLC30A10
Target ValidationSLC30A10
Huge Navigator SLC30A10 [HugePedia]
snp3D : Map Gene to Disease55532
BioCentury BCIQSLC30A10
ClinGenSLC30A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55532
Chemical/Pharm GKB GenePA142670903
Clinical trialSLC30A10
Miscellaneous
canSAR (ICR)SLC30A10 (select the gene name)
DataMed IndexSLC30A10
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A10
EVEXSLC30A10
GoPubMedSLC30A10
iHOPSLC30A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:08:01 CET 2019

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