Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC30A7 (solute carrier family 30 member 7)

Identity

Alias_namessolute carrier family 30 (zinc transporter), member 7
Alias_symbol (synonym)ZnTL2
ZNT7
Other aliasZnT-7
HGNC (Hugo) SLC30A7
LocusID (NCBI) 148867
Atlas_Id 54636
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100896078 and ends at 100981755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC30A7 (1p21.2) / HHIPL2 (1q41)SLC30A7 (1p21.2) / MACF1 (1p34.3)SLC30A7 (1p21.2) / UROC1 (3q21.3)
TNFRSF1B (1p36.22) / SLC30A7 (1p21.2)SLC30A7 1p21.2 / HHIPL2 1q41

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;1)(p21;p34) SLC30A7/MACF1
t(1;1)(p21;q41) SLC30A7/HHIPL2


External links

Nomenclature
HGNC (Hugo)SLC30A7   19306
Cards
Entrez_Gene (NCBI)SLC30A7  148867  solute carrier family 30 member 7
AliasesZNT7; ZnT-7; ZnTL2
GeneCards (Weizmann)SLC30A7
Ensembl hg19 (Hinxton)ENSG00000162695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162695 [Gene_View]  ENSG00000162695 [Sequence]  chr1:100896078-100981755 [Contig_View]  SLC30A7 [Vega]
ICGC DataPortalENSG00000162695
TCGA cBioPortalSLC30A7
AceView (NCBI)SLC30A7
Genatlas (Paris)SLC30A7
WikiGenes148867
SOURCE (Princeton)SLC30A7
Genetics Home Reference (NIH)SLC30A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A7  -     chr1:100896078-100981755 +  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A7  -     1p21.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC30A7 - 1p21.2 [CytoView hg19]  SLC30A7 - 1p21.2 [CytoView hg38]
ImmunoBaseENSG00000162695
Mapping of homologs : NCBISLC30A7 [Mapview hg19]  SLC30A7 [Mapview hg38]
OMIM611149   
Gene and transcription
Genbank (Entrez)AF233345 AF529197 AK023089 AK313638 AY094606
RefSeq transcript (Entrez)NM_001144884 NM_133496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A7
Cluster EST : UnigeneHs.533903 [ NCBI ]
CGAP (NCI)Hs.533903
Alternative Splicing GalleryENSG00000162695
Gene ExpressionSLC30A7 [ NCBI-GEO ]   SLC30A7 [ EBI - ARRAY_EXPRESS ]   SLC30A7 [ SEEK ]   SLC30A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148867
GTEX Portal (Tissue expression)SLC30A7
Human Protein AtlasENSG00000162695-SLC30A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEW0
Splice isoforms : SwissVarQ8NEW0
PhosPhoSitePlusQ8NEW0
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD_sf   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A7
DMDM Disease mutations148867
Blocks (Seattle)SLC30A7
SuperfamilyQ8NEW0
Human Protein Atlas [tissue]ENSG00000162695-SLC30A7 [tissue]
Peptide AtlasQ8NEW0
HPRD15369
IPIIPI00302605   IPI00646270   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEW0
IntAct (EBI)Q8NEW0
FunCoupENSG00000162695
BioGRIDSLC30A7
STRING (EMBL)SLC30A7
ZODIACSLC30A7
Ontologies - Pathways
QuickGOQ8NEW0
Ontology : AmiGOcytoplasm  Golgi apparatus  Golgi apparatus  zinc ion transport  cation transmembrane transporter activity  integral component of membrane  cytoplasmic vesicle  vesicle  sequestering of zinc ion  perinuclear region of cytoplasm  cation transmembrane transport  
Ontology : EGO-EBIcytoplasm  Golgi apparatus  Golgi apparatus  zinc ion transport  cation transmembrane transporter activity  integral component of membrane  cytoplasmic vesicle  vesicle  sequestering of zinc ion  perinuclear region of cytoplasm  cation transmembrane transport  
NDEx NetworkSLC30A7
Atlas of Cancer Signalling NetworkSLC30A7
Wikipedia pathwaysSLC30A7
Orthology - Evolution
OrthoDB148867
GeneTree (enSembl)ENSG00000162695
Phylogenetic Trees/Animal Genes : TreeFamSLC30A7
HOGENOMQ8NEW0
Homologs : HomoloGeneSLC30A7
Homology/Alignments : Family Browser (UCSC)SLC30A7
Gene fusions - Rearrangements
Fusion : MitelmanSLC30A7/HHIPL2 [1p21.2/1q41]  
Fusion : MitelmanSLC30A7/MACF1 [1p21.2/1p34.3]  [t(1;1)(p21;p34)]  
Fusion PortalSLC30A7 1p21.2 HHIPL2 1q41 BRCA
Fusion : QuiverSLC30A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A7
dbVarSLC30A7
ClinVarSLC30A7
1000_GenomesSLC30A7 
Exome Variant ServerSLC30A7
ExAC (Exome Aggregation Consortium)ENSG00000162695
GNOMAD BrowserENSG00000162695
Varsome BrowserSLC30A7
Genetic variants : HAPMAP148867
Genomic Variants (DGV)SLC30A7 [DGVbeta]
DECIPHERSLC30A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A7 
Mutations
ICGC Data PortalSLC30A7 
TCGA Data PortalSLC30A7 
Broad Tumor PortalSLC30A7
OASIS PortalSLC30A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC30A7
Mutations and Diseases : HGMDSLC30A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A7
DgiDB (Drug Gene Interaction Database)SLC30A7
DoCM (Curated mutations)SLC30A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A7 (select a term)
intoGenSLC30A7
Cancer3DSLC30A7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611149   
Orphanet
DisGeNETSLC30A7
MedgenSLC30A7
Genetic Testing Registry SLC30A7
NextProtQ8NEW0 [Medical]
TSGene148867
GENETestsSLC30A7
Target ValidationSLC30A7
Huge Navigator SLC30A7 [HugePedia]
snp3D : Map Gene to Disease148867
BioCentury BCIQSLC30A7
ClinGenSLC30A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148867
Chemical/Pharm GKB GenePA134891595
Clinical trialSLC30A7
Miscellaneous
canSAR (ICR)SLC30A7 (select the gene name)
DataMed IndexSLC30A7
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A7
EVEXSLC30A7
GoPubMedSLC30A7
iHOPSLC30A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:08:02 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.