Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC37A1 (solute carrier family 37 member 1)

Identity

Alias_namessolute carrier family 37 (glycerol-3-phosphate transporter), member 1
solute carrier family 37 (glucose-6-phosphate transporter), member 1
Other aliasG3PP
HGNC (Hugo) SLC37A1
LocusID (NCBI) 54020
Atlas_Id 54637
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42499632 and ends at 42581440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE9A (21q22.3) / SLC37A1 (21q22.3)RNF213 (17q25.3) / SLC37A1 (21q22.3)SLC37A1 (21q22.3) / ABCG1 (21q22.3)
SLC37A1 (21q22.3) / H19 (11p15.5)SLC37A1 (21q22.3) / LTN1 (21q21.3)SLC37A1 (21q22.3) / NT5C3A (7p14.3)
SLC37A1 (21q22.3) / PCNT (21q22.3)SLC37A1 (21q22.3) / PCP4 (21q22.2)PDE9A 21q22.3 / SLC37A1 21q22.3
SLC37A1 21q22.3 NT5C3SLC37A1 21q22.3 / PCNT 21q22.3SLC37A1 21q22.3 / PCP4 21q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ]

Solid Tumors TT_t0721p14q22ID107499 TT_t2121q22q22ID104790 TT_t2121q22q22ID104801 TT_t2121q22q22ID104802 TT_t2121q22q22ID104803
TT_t2121q22q22ID104804

External links

Nomenclature
HGNC (Hugo)SLC37A1   11024
Cards
Entrez_Gene (NCBI)SLC37A1  54020  solute carrier family 37 member 1
AliasesG3PP
GeneCards (Weizmann)SLC37A1
Ensembl hg19 (Hinxton)ENSG00000160190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160190 [Gene_View]  ENSG00000160190 [Sequence]  chr21:42499632-42581440 [Contig_View]  SLC37A1 [Vega]
ICGC DataPortalENSG00000160190
TCGA cBioPortalSLC37A1
AceView (NCBI)SLC37A1
Genatlas (Paris)SLC37A1
WikiGenes54020
SOURCE (Princeton)SLC37A1
Genetics Home Reference (NIH)SLC37A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC37A1  -     chr21:42499632-42581440 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC37A1  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathSLC37A1 - 21q22.3 [CytoView hg19]  SLC37A1 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160190
Mapping of homologs : NCBISLC37A1 [Mapview hg19]  SLC37A1 [Mapview hg38]
OMIM608094   
Gene and transcription
Genbank (Entrez)AF289589 AF311320 AJ269529 AJ277912 AJ277913
RefSeq transcript (Entrez)NM_001320537 NM_018964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC37A1
Cluster EST : UnigeneHs.547009 [ NCBI ]
CGAP (NCI)Hs.547009
Alternative Splicing GalleryENSG00000160190
Gene ExpressionSLC37A1 [ NCBI-GEO ]   SLC37A1 [ EBI - ARRAY_EXPRESS ]   SLC37A1 [ SEEK ]   SLC37A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC37A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54020
GTEX Portal (Tissue expression)SLC37A1
Human Protein AtlasENSG00000160190-SLC37A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57057   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57057  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57057
Splice isoforms : SwissVarP57057
PhosPhoSitePlusP57057
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    MFS_trans_sf    Sugar_P_transporter   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC37A1
DMDM Disease mutations54020
Blocks (Seattle)SLC37A1
SuperfamilyP57057
Human Protein Atlas [tissue]ENSG00000160190-SLC37A1 [tissue]
Peptide AtlasP57057
HPRD10479
IPIIPI00299057   IPI00798070   
Protein Interaction databases
DIP (DOE-UCLA)P57057
IntAct (EBI)P57057
FunCoupENSG00000160190
BioGRIDSLC37A1
STRING (EMBL)SLC37A1
ZODIACSLC37A1
Ontologies - Pathways
QuickGOP57057
Ontology : AmiGOendoplasmic reticulum membrane  carbohydrate transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose 6-phosphate:inorganic phosphate antiporter activity  
Ontology : EGO-EBIendoplasmic reticulum membrane  carbohydrate transport  glucose-6-phosphate transport  glucose-6-phosphate transport  membrane  integral component of endoplasmic reticulum membrane  phosphate ion transmembrane transport  glucose 6-phosphate:inorganic phosphate antiporter activity  
NDEx NetworkSLC37A1
Atlas of Cancer Signalling NetworkSLC37A1
Wikipedia pathwaysSLC37A1
Orthology - Evolution
OrthoDB54020
GeneTree (enSembl)ENSG00000160190
Phylogenetic Trees/Animal Genes : TreeFamSLC37A1
HOGENOMP57057
Homologs : HomoloGeneSLC37A1
Homology/Alignments : Family Browser (UCSC)SLC37A1
Gene fusions - Rearrangements
Fusion : MitelmanPDE9A/SLC37A1 [21q22.3/21q22.3]  [t(21;21)(q22;q22)]  
Fusion : MitelmanSLC37A1/ABCG1 [21q22.3/21q22.3]  [t(21;21)(q22;q22)]  
Fusion : MitelmanSLC37A1/NT5C3A [21q22.3/7p14.3]  [t(7;21)(p14;q22)]  
Fusion : MitelmanSLC37A1/PCNT [21q22.3/21q22.3]  [t(21;21)(q22;q22)]  
Fusion : MitelmanSLC37A1/PCP4 [21q22.3/21q22.2]  [t(21;21)(q22;q22)]  
Fusion PortalPDE9A 21q22.3 SLC37A1 21q22.3 PRAD
Fusion PortalSLC37A1 21q22.3 NT5C3 BRCA
Fusion PortalSLC37A1 21q22.3 PCNT 21q22.3 BRCA
Fusion PortalSLC37A1 21q22.3 PCP4 21q22.2 BRCA
Fusion : QuiverSLC37A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC37A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC37A1
dbVarSLC37A1
ClinVarSLC37A1
1000_GenomesSLC37A1 
Exome Variant ServerSLC37A1
ExAC (Exome Aggregation Consortium)ENSG00000160190
GNOMAD BrowserENSG00000160190
Varsome BrowserSLC37A1
Genetic variants : HAPMAP54020
Genomic Variants (DGV)SLC37A1 [DGVbeta]
DECIPHERSLC37A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC37A1 
Mutations
ICGC Data PortalSLC37A1 
TCGA Data PortalSLC37A1 
Broad Tumor PortalSLC37A1
OASIS PortalSLC37A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC37A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC37A1
Mutations and Diseases : HGMDSLC37A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC37A1
DgiDB (Drug Gene Interaction Database)SLC37A1
DoCM (Curated mutations)SLC37A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC37A1 (select a term)
intoGenSLC37A1
Cancer3DSLC37A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608094   
Orphanet
DisGeNETSLC37A1
MedgenSLC37A1
Genetic Testing Registry SLC37A1
NextProtP57057 [Medical]
TSGene54020
GENETestsSLC37A1
Target ValidationSLC37A1
Huge Navigator SLC37A1 [HugePedia]
snp3D : Map Gene to Disease54020
BioCentury BCIQSLC37A1
ClinGenSLC37A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54020
Chemical/Pharm GKB GenePA35892
Clinical trialSLC37A1
Miscellaneous
canSAR (ICR)SLC37A1 (select the gene name)
DataMed IndexSLC37A1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC37A1
EVEXSLC37A1
GoPubMedSLC37A1
iHOPSLC37A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:29:14 CEST 2019
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