Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC39A13 (solute carrier family 39 member 13)

Identity

Alias_namessolute carrier family 39 (metal ion transporter), member 13
solute carrier family 39 (zinc transporter), member 13
Alias_symbol (synonym)FLJ25785
Other aliasEDSSPD3
LZT-Hs9
SCDEDS
ZIP13
HGNC (Hugo) SLC39A13
LocusID (NCBI) 91252
Atlas_Id 73434
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47408495 and ends at 47416500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC39A13 (11p11.2) / SLC39A13 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC39A13   20859
Cards
Entrez_Gene (NCBI)SLC39A13  91252  solute carrier family 39 member 13
AliasesEDSSPD3; LZT-Hs9; SCDEDS; ZIP13
GeneCards (Weizmann)SLC39A13
Ensembl hg19 (Hinxton)ENSG00000165915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165915 [Gene_View]  ENSG00000165915 [Sequence]  chr11:47408495-47416500 [Contig_View]  SLC39A13 [Vega]
ICGC DataPortalENSG00000165915
TCGA cBioPortalSLC39A13
AceView (NCBI)SLC39A13
Genatlas (Paris)SLC39A13
WikiGenes91252
SOURCE (Princeton)SLC39A13
Genetics Home Reference (NIH)SLC39A13
Genomic and cartography
GoldenPath hg38 (UCSC)SLC39A13  -     chr11:47408495-47416500 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC39A13  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC39A13 - 11p11.2 [CytoView hg19]  SLC39A13 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000165915
Mapping of homologs : NCBISLC39A13 [Mapview hg19]  SLC39A13 [Mapview hg38]
OMIM608735   612350   
Gene and transcription
Genbank (Entrez)AK098651 AL133581 AW339212 BC008853 BC019016
RefSeq transcript (Entrez)NM_001128225 NM_001330245 NM_152264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC39A13
Cluster EST : UnigeneHs.523664 [ NCBI ]
CGAP (NCI)Hs.523664
Alternative Splicing GalleryENSG00000165915
Gene ExpressionSLC39A13 [ NCBI-GEO ]   SLC39A13 [ EBI - ARRAY_EXPRESS ]   SLC39A13 [ SEEK ]   SLC39A13 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91252
GTEX Portal (Tissue expression)SLC39A13
Human Protein AtlasENSG00000165915-SLC39A13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H72
Splice isoforms : SwissVarQ96H72
PhosPhoSitePlusQ96H72
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A13
DMDM Disease mutations91252
Blocks (Seattle)SLC39A13
SuperfamilyQ96H72
Human Protein Atlas [tissue]ENSG00000165915-SLC39A13 [tissue]
Peptide AtlasQ96H72
IPIIPI00305715   IPI00877021   IPI00980496   IPI00984247   IPI00984648   IPI00977479   IPI00975896   IPI00976908   IPI00985218   
Protein Interaction databases
DIP (DOE-UCLA)Q96H72
IntAct (EBI)Q96H72
FunCoupENSG00000165915
BioGRIDSLC39A13
STRING (EMBL)SLC39A13
ZODIACSLC39A13
Ontologies - Pathways
QuickGOQ96H72
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  cellular zinc ion homeostasis  cellular zinc ion homeostasis  cellular zinc ion homeostasis  response to zinc ion  integral component of membrane  integral component of Golgi membrane  protein homodimerization activity  perinuclear region of cytoplasm  connective tissue development  zinc ion transmembrane transport  zinc ion transmembrane transport  zinc ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  cellular zinc ion homeostasis  cellular zinc ion homeostasis  cellular zinc ion homeostasis  response to zinc ion  integral component of membrane  integral component of Golgi membrane  protein homodimerization activity  perinuclear region of cytoplasm  connective tissue development  zinc ion transmembrane transport  zinc ion transmembrane transport  zinc ion transmembrane transport  
NDEx NetworkSLC39A13
Atlas of Cancer Signalling NetworkSLC39A13
Wikipedia pathwaysSLC39A13
Orthology - Evolution
OrthoDB91252
GeneTree (enSembl)ENSG00000165915
Phylogenetic Trees/Animal Genes : TreeFamSLC39A13
HOGENOMQ96H72
Homologs : HomoloGeneSLC39A13
Homology/Alignments : Family Browser (UCSC)SLC39A13
Gene fusions - Rearrangements
Fusion : QuiverSLC39A13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A13
dbVarSLC39A13
ClinVarSLC39A13
1000_GenomesSLC39A13 
Exome Variant ServerSLC39A13
ExAC (Exome Aggregation Consortium)ENSG00000165915
GNOMAD BrowserENSG00000165915
Varsome BrowserSLC39A13
Genetic variants : HAPMAP91252
Genomic Variants (DGV)SLC39A13 [DGVbeta]
DECIPHERSLC39A13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC39A13 
Mutations
ICGC Data PortalSLC39A13 
TCGA Data PortalSLC39A13 
Broad Tumor PortalSLC39A13
OASIS PortalSLC39A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC39A13
Mutations and Diseases : HGMDSLC39A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A13
DgiDB (Drug Gene Interaction Database)SLC39A13
DoCM (Curated mutations)SLC39A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A13 (select a term)
intoGenSLC39A13
Cancer3DSLC39A13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608735    612350   
Orphanet17164   
DisGeNETSLC39A13
MedgenSLC39A13
Genetic Testing Registry SLC39A13
NextProtQ96H72 [Medical]
TSGene91252
GENETestsSLC39A13
Target ValidationSLC39A13
Huge Navigator SLC39A13 [HugePedia]
snp3D : Map Gene to Disease91252
BioCentury BCIQSLC39A13
ClinGenSLC39A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91252
Chemical/Pharm GKB GenePA134948414
Clinical trialSLC39A13
Miscellaneous
canSAR (ICR)SLC39A13 (select the gene name)
DataMed IndexSLC39A13
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A13
EVEXSLC39A13
GoPubMedSLC39A13
iHOPSLC39A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:05:43 CEST 2019
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