Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC45A3 (solute carrier family 45, member 3)

Identity

Other namesIPCA-2
IPCA-6
IPCA-8
IPCA6
PCANAP2
PCANAP6
PCANAP8
PRST
HGNC (Hugo) SLC45A3
Location 1q32.1
Location_base_pair Starts at 203893604 and ends at 203916253 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)SLC45A3   8642
Entrez_Gene (NCBI)SLC45A3  85414  solute carrier family 45, member 3
Cards
GeneCards (Weizmann)SLC45A3
Ensembl (Hinxton)ENSG00000158715 [Gene_View]  SLC45A3 [Vega]
AceView (NCBI)SLC45A3
Genatlas (Paris)SLC45A3
euGene (Indiana)85414
SOURCE (Stanford)NM_033102
Gene Expression (Array Express) ENSG00000158715
Genomic and cartography
GoldenPath (UCSC)SLC45A3  -  1q32.1   chr1:203893604-203916253 -  1q32.1   [Description]    (hg18-March_2006)
EnsemblSLC45A3 - 1q32.1 [CytoView]
Mapping of homologs : NCBISLC45A3 [Mapview]
OMIM605097   
Gene and transcription
Gene : Genbank (Entrez)AK290364 AK313479 AL832933 AY033593 BC050416
Reference sequence (RefSeq transcript) :SRSNM_033102
Reference transcript : EntrezNM_033102
RefSeq genomic : SRSAC_000044 AC_000133 NC_000001 NT_004487 NW_001838533 NW_926128
RefSeq genomic : EntrezAC_000044 AC_000133 NC_000001 NT_004487 NW_001838533 NW_926128
Consensus coding sequences : CCDS NCBISLC45A3
Cluster EST : UnigeneHs.278695 [ SRS ] Hs.278695 [ NCBI ]
Alternative Splicing : Fast-db (Paris)17759
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ96JT2 (SRS) Q96JT2 (Expasy) Q96JT2 (Uniprot)
With graphics : InterProQ96JT2
Splice isoforms : VarSplice FASTAQ96JT2(VarSplice FASTA)
Domains : Interpro (SRS)MFS_1    MFS_general_subst_transpt   
Domains : Interpro (EBI)MFS_1    MFS_general_subst_transpt   
Related proteins : CluSTrQ96JT2
Domain families : Pfam SRSMFS_1 (PF07690)   
Domain families : Pfam SangerMFS_1 (PF07690)   
Domain families : Pfam NCBIpfam07690   
Blocks (Seattle)Q96JT2
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD16312
Protein Interaction databases
DIP (DOE-UCLA)Q96JT2
IntAct (EBI)Q96JT2
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBISLC45A3
SNP : GeneSNP UtahSLC45A3
SNP : HGBaseSLC45A3
Genetic variants : HAPMAPSLC45A3
Cancer Gene: CensusSLC45A3 
Somatic Mutations in Cancer : COSMICSLC45A3 
Translocation Breakpoints in Cancer : TICdbmembrane;integral 
Mutations and Diseases : HGMDSLC45A3
Hereditary diseases : OMIM605097   
Hereditary diseases : GENETests605097   
Diseases : Genetic AssociationSLC45A3
General knowledge
Homologs : HomoloGeneSLC45A3
Homology/Alignments : Family Browser UCSCSLC45A3
Phylogenetic Trees/Animal Genes : TreeFamSLC45A3
Chemical/Protein Interactions : CTD85414
Keywords Ontology : AmiGOmembrane  integral to membrane  transmembrane transport  
Keywords Ontology : EGO-EBImembrane  integral to membrane  transmembrane transport  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesSLC45A3 Related clones (RZPD - Berlin)
Literature
PubMed11 Pubmed reference(s) in Entrez
PubGeneSLC45A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:33:58 CET 2010
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