SLITRK6 (SLIT and NTRK like family member 6)

2014-11-01  

Identity

HGNC
SLITRK6
LOCATION
13q31.1
LOCUSID
84189
ALIAS
DFNMYP

Other Information

Locus ID:

NCBI: 84189
MIM: 609681
HGNC: 23503
Ensembl: ENSG00000184564

Variants:

dbSNP: 84189
ClinVar: 84189
TCGA: ENSG00000184564
COSMIC: SLITRK6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000184564ENST00000643778Q9H5Y7
ENSG00000184564ENST00000647374Q9H5Y7

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
235430542013SLITRK6 mutations cause myopia and deafness in humans and mice.16
239461382014A homozygous SLITRK6 nonsense mutation is associated with progressive auditory neuropathy in humans.0
275309372017Human cytomegalovirus downregulates SLITRK6 expression through IE2.0
295514972018A novel mutation in SLITRK6 causes deafness and myopia in a Moroccan family.0

Citation

Dessen P

SLITRK6 (SLIT and NTRK like family member 6)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73524/slitrk6