SMC5 (structural maintenance of chromosomes 5)

2007-02-01  

Identity

HGNC
LOCATION
9q21.12
LOCUSID
ALIAS
SMC5L1
FUSION GENES

Other Information

Locus ID:

NCBI: 23137
MIM: 609386
HGNC: 20465
Ensembl: ENSG00000198887

Variants:

dbSNP: 23137
ClinVar: 23137
TCGA: ENSG00000198887
COSMIC: SMC5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000198887ENST00000361138Q8IY18

Expression (GTEx)

0
10
20
30
40
50
60
70

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
SUMOylationREACTOMER-HSA-2990846
SUMO E3 ligases SUMOylate target proteinsREACTOMER-HSA-3108232
SUMOylation of DNA damage response and repair proteinsREACTOMER-HSA-3108214

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
383758302024The SMC5/6 complex: folding chromosomes back into shape when genomes take a break.1
383758302024The SMC5/6 complex: folding chromosomes back into shape when genomes take a break.1
358948362023The structural maintenance of chromosomes 5 is a possible biomarker for individualized treatment of colorectal cancer.1
366277652023In-frame deletion of SMC5 related with the phenotype of primordial dwarfism, chromosomal instability and insulin resistance.5
358948362023The structural maintenance of chromosomes 5 is a possible biomarker for individualized treatment of colorectal cancer.1
366277652023In-frame deletion of SMC5 related with the phenotype of primordial dwarfism, chromosomal instability and insulin resistance.5
363333052022Pathogenic variants in SLF2 and SMC5 cause segmented chromosomes and mosaic variegated hyperploidy.11
363763942022Epigenetic silencing by the SMC5/6 complex mediates HIV-1 latency.10
363333052022Pathogenic variants in SLF2 and SMC5 cause segmented chromosomes and mosaic variegated hyperploidy.11
363763942022Epigenetic silencing by the SMC5/6 complex mediates HIV-1 latency.10
338118312021The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr.39
338118312021The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr.39
318678882020SMC5/6 acts jointly with Fanconi anemia factors to support DNA repair and genome stability.15
323206462020Inducible Degradation of the Human SMC5/6 Complex Reveals an Essential Role Only during Interphase.23
323896902020Molecular Insights into the Architecture of the Human SMC5/6 Complex.16

Citation

Dessen P

SMC5 (structural maintenance of chromosomes 5)

Atlas Genet Cytogenet Oncol Haematol. 2007-02-01

Online version: http://atlasgeneticsoncology.org/gene/45967/smc5