SNAP47 (synaptosome associated protein 47)

2014-05-01  

Identity

HGNC
SNAP47
LOCATION
1q42.13
LOCUSID
116841
ALIAS
C1orf142,ESFI5812,HEL-S-290,HEL170,SNAP-47,SVAP1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 116841
HGNC: 30669
Ensembl: ENSG00000143740

Variants:

dbSNP: 116841
ClinVar: 116841
TCGA: ENSG00000143740
COSMIC: SNAP47

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000143740ENST00000315781Q5SQN1
ENSG00000143740ENST00000366759Q5SQN1
ENSG00000143740ENST00000366760Q5SQN1
ENSG00000143740ENST00000418653H0Y627
ENSG00000143740ENST00000426344H7C3C7
ENSG00000143740ENST00000478768A0A087X2J6
ENSG00000143740ENST00000606873U3KPT7
ENSG00000143740ENST00000617596A0A087X0B7

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
223736592012Differential expression of PAI-RBP1, C1orf142, and COTL1 in non-small cell lung cancer cell lines with different tumor metastatic potential.7

Citation

Dessen P

SNAP47 (synaptosome associated protein 47)

Atlas Genet Cytogenet Oncol Haematol. 2014-05-01

Online version: http://atlasgeneticsoncology.org/gene/53924/snap47