SNAPC3 (small nuclear RNA activating complex polypeptide 3)

2014-11-01  

Identity

HGNC
SNAPC3
LOCATION
9p22.3
LOCUSID
6619
ALIAS
PTFbeta,SNAP50
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6619
MIM: 602348
HGNC: 11136
Ensembl: ENSG00000164975

Variants:

dbSNP: 6619
ClinVar: 6619
TCGA: ENSG00000164975
COSMIC: SNAPC3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000164975ENST00000380799Q5T284
ENSG00000164975ENST00000380821Q92966
ENSG00000164975ENST00000421710Q5T282
ENSG00000164975ENST00000467062Q92966
ENSG00000164975ENST00000490969Q92966
ENSG00000164975ENST00000610884Q92966

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Gene ExpressionREACTOMER-HSA-74160
RNA Polymerase I, RNA Polymerase III, and Mitochondrial TranscriptionREACTOMER-HSA-504046
RNA Polymerase III TranscriptionREACTOMER-HSA-74158
RNA Polymerase III Abortive And Retractive InitiationREACTOMER-HSA-749476
RNA Polymerase III Transcription InitiationREACTOMER-HSA-76046
RNA Polymerase III Transcription Initiation From Type 3 PromoterREACTOMER-HSA-76071
RNA polymerase II transcribes snRNA genesREACTOMER-HSA-6807505

References

Pubmed IDYearTitleCitations
169018962006The unorthodox SNAP50 zinc finger domain contributes to cooperative promoter recognition by human SNAPC.7

Citation

Dessen P

SNAPC3 (small nuclear RNA activating complex polypeptide 3)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73603/snapc3