Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG20 (small nucleolar RNA host gene 20)

Identity

Alias (NCBI)C17orf86
LINC00338
NCRNA00338
SCARNA16HG
HGNC (Hugo) SNHG20
HGNC Alias symbPRO0872
FLJ25582
DKFZp686L05235
SCARNA16HG
HGNC Previous nameC17orf86
 NCRNA00338
 LINC00338
HGNC Previous namechromosome 17 open reading frame 86
 non-protein coding RNA 338
 long intergenic non-protein coding RNA 338
 small nucleolar RNA host gene 20 (non-protein coding)
LocusID (NCBI) 654434
Atlas_Id 57085
Location 17q25.2  [Link to chromosome band 17q25]
Location_base_pair Starts at 77088643 and ends at 77094986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD82 (11p11.2) / SNHG20 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG20   33099
Cards
Entrez_Gene (NCBI)SNHG20  654434  small nucleolar RNA host gene 20
AliasesC17orf86; LINC00338; NCRNA00338; SCARNA16HG
GeneCards (Weizmann)SNHG20
Ensembl hg19 (Hinxton)ENSG00000234912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234912 [Gene_View]  ENSG00000234912 [Sequence]  chr17:77088643-77094986 [Contig_View]  SNHG20 [Vega]
ICGC DataPortalENSG00000234912
TCGA cBioPortalSNHG20
AceView (NCBI)SNHG20
Genatlas (Paris)SNHG20
WikiGenes654434
SOURCE (Princeton)SNHG20
Genetics Home Reference (NIH)SNHG20
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG20  -     chr17:77088643-77094986 +  17q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG20  -     17q25.2   [Description]    (hg19-Feb_2009)
GoldenPathSNHG20 - 17q25.2 [CytoView hg19]  SNHG20 - 17q25.2 [CytoView hg38]
ImmunoBaseENSG00000234912
genome Data Viewer NCBISNHG20 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF130050 AK098448 BX648413 DA068554 DA916381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG20
Alternative Splicing GalleryENSG00000234912
Gene ExpressionSNHG20 [ NCBI-GEO ]   SNHG20 [ EBI - ARRAY_EXPRESS ]   SNHG20 [ SEEK ]   SNHG20 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG20 [ Firebrowse - Broad ]
GenevisibleExpression of SNHG20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654434
GTEX Portal (Tissue expression)SNHG20
Human Protein AtlasENSG00000234912-SNHG20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG20
DMDM Disease mutations654434
Blocks (Seattle)SNHG20
Human Protein Atlas [tissue]ENSG00000234912-SNHG20 [tissue]
Protein Interaction databases
FunCoupENSG00000234912
BioGRIDSNHG20
STRING (EMBL)SNHG20
ZODIACSNHG20
Ontologies - Pathways
Huge Navigator SNHG20 [HugePedia]
snp3D : Map Gene to Disease654434
BioCentury BCIQSNHG20
ClinGenSNHG20
Clinical trials, drugs, therapy
Protein Interactions : CTD654434
Clinical trialSNHG20
Miscellaneous
canSAR (ICR)SNHG20 (select the gene name)
HarmonizomeSNHG20
DataMed IndexSNHG20
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG20
EVEXSNHG20
GoPubMedSNHG20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:36:51 CEST 2020

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