Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG28 (small nucleolar RNA host gene 28)

Identity

Alias_namesC1orf204
chromosome 1 open reading frame 204
Alias_symbol (synonym)FLJ39187
VSIG8-OT1
Other alias
HGNC (Hugo) SNHG28
LocusID (NCBI) 284677
Atlas_Id 79364
Location 1q23.2  [Link to chromosome band 1q23]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNHG28   27647
Cards
Entrez_Gene (NCBI)SNHG28  284677  small nucleolar RNA host gene 28
AliasesC1orf204; VSIG8-OT1
GeneCards (Weizmann)SNHG28
Ensembl hg19 (Hinxton)ENSG00000256029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256029 [Gene_View]  ENSG00000256029 [Sequence]  - [Contig_View]  SNHG28 [Vega]
ICGC DataPortalENSG00000256029
TCGA cBioPortalSNHG28
AceView (NCBI)SNHG28
Genatlas (Paris)SNHG28
WikiGenes284677
SOURCE (Princeton)SNHG28
Genetics Home Reference (NIH)SNHG28
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG28  -  
GoldenPath hg19 (UCSC)SNHG28  -  
GoldenPathSNHG28 - [CytoView hg19]  SNHG28 - [CytoView hg38]
ImmunoBaseENSG00000256029
Mapping of homologs : NCBISNHG28 [Mapview hg19]  SNHG28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096506 AL080176 AL537381 BI753917 DA288133
RefSeq transcript (Entrez)NM_001134233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG28
Alternative Splicing GalleryENSG00000256029
Gene ExpressionSNHG28 [ NCBI-GEO ]   SNHG28 [ EBI - ARRAY_EXPRESS ]   SNHG28 [ SEEK ]   SNHG28 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284677
GTEX Portal (Tissue expression)SNHG28
Human Protein AtlasENSG00000256029-SNHG28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DPA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DPA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DPA3
Splice isoforms : SwissVarP0DPA3
PhosPhoSitePlusP0DPA3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG28
DMDM Disease mutations284677
Blocks (Seattle)SNHG28
SuperfamilyP0DPA3
Human Protein Atlas [tissue]ENSG00000256029-SNHG28 [tissue]
Peptide AtlasP0DPA3
IPIIPI00376274   IPI00479090   
Protein Interaction databases
DIP (DOE-UCLA)P0DPA3
IntAct (EBI)P0DPA3
FunCoupENSG00000256029
BioGRIDSNHG28
STRING (EMBL)SNHG28
ZODIACSNHG28
Ontologies - Pathways
QuickGOP0DPA3
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkSNHG28
Atlas of Cancer Signalling NetworkSNHG28
Wikipedia pathwaysSNHG28
Orthology - Evolution
OrthoDB284677
GeneTree (enSembl)ENSG00000256029
Phylogenetic Trees/Animal Genes : TreeFamSNHG28
HOGENOMP0DPA3
Homologs : HomoloGeneSNHG28
Homology/Alignments : Family Browser (UCSC)SNHG28
Gene fusions - Rearrangements
Fusion : QuiverSNHG28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNHG28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNHG28
dbVarSNHG28
ClinVarSNHG28
1000_GenomesSNHG28 
Exome Variant ServerSNHG28
ExAC (Exome Aggregation Consortium)ENSG00000256029
GNOMAD BrowserENSG00000256029
Varsome BrowserSNHG28
Genetic variants : HAPMAP284677
Genomic Variants (DGV)SNHG28 [DGVbeta]
DECIPHERSNHG28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNHG28 
Mutations
ICGC Data PortalSNHG28 
TCGA Data PortalSNHG28 
Broad Tumor PortalSNHG28
OASIS PortalSNHG28 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNHG28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNHG28
DgiDB (Drug Gene Interaction Database)SNHG28
DoCM (Curated mutations)SNHG28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNHG28 (select a term)
intoGenSNHG28
Cancer3DSNHG28(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNHG28
MedgenSNHG28
Genetic Testing Registry SNHG28
NextProtP0DPA3 [Medical]
TSGene284677
GENETestsSNHG28
Target ValidationSNHG28
Huge Navigator SNHG28 [HugePedia]
snp3D : Map Gene to Disease284677
BioCentury BCIQSNHG28
ClinGenSNHG28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284677
Chemical/Pharm GKB GenePA142672405
Clinical trialSNHG28
Miscellaneous
canSAR (ICR)SNHG28 (select the gene name)
HarmonizomeSNHG28
DataMed IndexSNHG28
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG28
EVEXSNHG28
GoPubMedSNHG28
iHOPSNHG28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 20:29:43 CET 2020

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