Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNORA80A (small nucleolar RNA, H/ACA box 80A)

Identity

Alias (NCBI)ACA67
SNORA80
HGNC (Hugo) SNORA80A
HGNC Alias symbACA67
HGNC Previous nameSNORA80
HGNC Previous namesmall nucleolar RNA, H/ACA box 80
LocusID (NCBI) 677846
Atlas_Id 73754
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32377187 and ends at 32377322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA80A   32666
Cards
Entrez_Gene (NCBI)SNORA80A  677846  small nucleolar RNA, H/ACA box 80A
AliasesACA67; SNORA80
GeneCards (Weizmann)SNORA80A
Ensembl hg19 (Hinxton)ENSG00000200792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200792 [Gene_View]  ENSG00000200792 [Sequence]  chr21:32377187-32377322 [Contig_View]  SNORA80A [Vega]
ICGC DataPortalENSG00000200792
TCGA cBioPortalSNORA80A
AceView (NCBI)SNORA80A
Genatlas (Paris)SNORA80A
WikiGenes677846
SOURCE (Princeton)SNORA80A
Genetics Home Reference (NIH)SNORA80A
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA80A  -     chr21:32377187-32377322 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA80A  -     21q22.11   [Description]    (hg19-Feb_2009)
GoldenPathSNORA80A - 21q22.11 [CytoView hg19]  SNORA80A - 21q22.11 [CytoView hg38]
ImmunoBaseENSG00000200792
genome Data Viewer NCBISNORA80A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA80A
Alternative Splicing GalleryENSG00000200792
Gene ExpressionSNORA80A [ NCBI-GEO ]   SNORA80A [ EBI - ARRAY_EXPRESS ]   SNORA80A [ SEEK ]   SNORA80A [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA80A [ Firebrowse - Broad ]
GenevisibleExpression of SNORA80A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677846
GTEX Portal (Tissue expression)SNORA80A
Human Protein AtlasENSG00000200792-SNORA80A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA80A
DMDM Disease mutations677846
Blocks (Seattle)SNORA80A
Human Protein Atlas [tissue]ENSG00000200792-SNORA80A [tissue]
Protein Interaction databases
FunCoupENSG00000200792
BioGRIDSNORA80A
STRING (EMBL)SNORA80A
ZODIACSNORA80A
Ontologies - Pathways
Huge Navigator SNORA80A [HugePedia]
snp3D : Map Gene to Disease677846
BioCentury BCIQSNORA80A
ClinGenSNORA80A
Clinical trials, drugs, therapy
Protein Interactions : CTD677846
Pharm GKB GenePA144596282
Clinical trialSNORA80A
Miscellaneous
canSAR (ICR)SNORA80A (select the gene name)
HarmonizomeSNORA80A
DataMed IndexSNORA80A
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA80A
EVEXSNORA80A
GoPubMedSNORA80A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:29:32 CEST 2020

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