Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORC (secondary ossification center associated regulator of chondrocyte maturation)

Identity

Other aliasASCL830
C2orf82
UNQ830
HGNC (Hugo) SNORC
LocusID (NCBI) 389084
Atlas_Id 80515
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232870094 and ends at 232878704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNORC   33763
Cards
Entrez_Gene (NCBI)SNORC  389084  secondary ossification center associated regulator of chondrocyte maturation
AliasesASCL830; C2orf82; UNQ830
GeneCards (Weizmann)SNORC
Ensembl hg19 (Hinxton)ENSG00000182600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182600 [Gene_View]  ENSG00000182600 [Sequence]  chr2:232870094-232878704 [Contig_View]  SNORC [Vega]
ICGC DataPortalENSG00000182600
TCGA cBioPortalSNORC
AceView (NCBI)SNORC
Genatlas (Paris)SNORC
WikiGenes389084
SOURCE (Princeton)SNORC
Genetics Home Reference (NIH)SNORC
Genomic and cartography
GoldenPath hg38 (UCSC)SNORC  -     chr2:232870094-232878704 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORC  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathSNORC - 2q37.1 [CytoView hg19]  SNORC - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000182600
Mapping of homologs : NCBISNORC [Mapview hg19]  SNORC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026304 AY358535 BC035093 BC049848 BC130307
RefSeq transcript (Entrez)NM_001346120 NM_001346121 NM_001346122 NM_206895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORC
Cluster EST : UnigeneHs.657509 [ NCBI ]
CGAP (NCI)Hs.657509
Alternative Splicing GalleryENSG00000182600
Gene ExpressionSNORC [ NCBI-GEO ]   SNORC [ EBI - ARRAY_EXPRESS ]   SNORC [ SEEK ]   SNORC [ MEM ]
Gene Expression Viewer (FireBrowse)SNORC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389084
GTEX Portal (Tissue expression)SNORC
Human Protein AtlasENSG00000182600-SNORC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX34
Splice isoforms : SwissVarQ6UX34
PhosPhoSitePlusQ6UX34
Domains : Interpro (EBI)SNORC   
Domain families : Pfam (Sanger)DUF4690 (PF15756)   
Domain families : Pfam (NCBI)pfam15756   
Conserved Domain (NCBI)SNORC
DMDM Disease mutations389084
Blocks (Seattle)SNORC
SuperfamilyQ6UX34
Human Protein Atlas [tissue]ENSG00000182600-SNORC [tissue]
Peptide AtlasQ6UX34
IPIIPI00374201   IPI00978846   IPI00916710   IPI00916443   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX34
IntAct (EBI)Q6UX34
FunCoupENSG00000182600
BioGRIDSNORC
STRING (EMBL)SNORC
ZODIACSNORC
Ontologies - Pathways
QuickGOQ6UX34
Ontology : AmiGOcytoplasm  integral component of membrane  cartilage development  collagen-containing extracellular matrix  cell periphery  cell periphery  
Ontology : EGO-EBIcytoplasm  integral component of membrane  cartilage development  collagen-containing extracellular matrix  cell periphery  cell periphery  
NDEx NetworkSNORC
Atlas of Cancer Signalling NetworkSNORC
Wikipedia pathwaysSNORC
Orthology - Evolution
OrthoDB389084
GeneTree (enSembl)ENSG00000182600
Phylogenetic Trees/Animal Genes : TreeFamSNORC
HOGENOMQ6UX34
Homologs : HomoloGeneSNORC
Homology/Alignments : Family Browser (UCSC)SNORC
Gene fusions - Rearrangements
Fusion : QuiverSNORC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNORC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNORC
dbVarSNORC
ClinVarSNORC
1000_GenomesSNORC 
Exome Variant ServerSNORC
ExAC (Exome Aggregation Consortium)ENSG00000182600
GNOMAD BrowserENSG00000182600
Varsome BrowserSNORC
Genetic variants : HAPMAP389084
Genomic Variants (DGV)SNORC [DGVbeta]
DECIPHERSNORC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNORC 
Mutations
ICGC Data PortalSNORC 
TCGA Data PortalSNORC 
Broad Tumor PortalSNORC
OASIS PortalSNORC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNORC
BioMutasearch SNORC
DgiDB (Drug Gene Interaction Database)SNORC
DoCM (Curated mutations)SNORC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNORC (select a term)
intoGenSNORC
Cancer3DSNORC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSNORC
MedgenSNORC
Genetic Testing Registry SNORC
NextProtQ6UX34 [Medical]
TSGene389084
GENETestsSNORC
Target ValidationSNORC
Huge Navigator SNORC [HugePedia]
snp3D : Map Gene to Disease389084
BioCentury BCIQSNORC
ClinGenSNORC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389084
Chemical/Pharm GKB GenePA162379659
Clinical trialSNORC
Miscellaneous
canSAR (ICR)SNORC (select the gene name)
DataMed IndexSNORC
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORC
EVEXSNORC
GoPubMedSNORC
iHOPSNORC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:06:57 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.