Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD12C (small nucleolar RNA, C/D box 12C)

Identity

Alias (NCBI)E2
E2-1
E3
RNU106
SNORD106
U106
HGNC (Hugo) SNORD12C
HGNC Alias symbU106
HGNC Previous nameRNU106
 SNORD106
HGNC Previous nameRNA, U106 small nucleolar
 small nucleolar RNA, C/D box 106
LocusID (NCBI) 26765
Atlas_Id 73905
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49278945 and ends at 49279023 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD12C   10105
Cards
Entrez_Gene (NCBI)SNORD12C  26765  small nucleolar RNA, C/D box 12C
AliasesE2; E2-1; E3; RNU106; 
SNORD106; U106
GeneCards (Weizmann)SNORD12C
Ensembl hg19 (Hinxton)ENSG00000209042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000209042 [Gene_View]  ENSG00000209042 [Sequence]  chr20:49278945-49279023 [Contig_View]  SNORD12C [Vega]
ICGC DataPortalENSG00000209042
TCGA cBioPortalSNORD12C
AceView (NCBI)SNORD12C
Genatlas (Paris)SNORD12C
WikiGenes26765
SOURCE (Princeton)SNORD12C
Genetics Home Reference (NIH)SNORD12C
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD12C  -     chr20:49278945-49279023 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD12C  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathSNORD12C - 20q13.13 [CytoView hg19]  SNORD12C - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000209042
genome Data Viewer NCBISNORD12C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD12C
Alternative Splicing GalleryENSG00000209042
Gene ExpressionSNORD12C [ NCBI-GEO ]   SNORD12C [ EBI - ARRAY_EXPRESS ]   SNORD12C [ SEEK ]   SNORD12C [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD12C [ Firebrowse - Broad ]
GenevisibleExpression of SNORD12C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26765
GTEX Portal (Tissue expression)SNORD12C
Human Protein AtlasENSG00000209042-SNORD12C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD12C
DMDM Disease mutations26765
Blocks (Seattle)SNORD12C
Human Protein Atlas [tissue]ENSG00000209042-SNORD12C [tissue]
Protein Interaction databases
FunCoupENSG00000209042
BioGRIDSNORD12C
STRING (EMBL)SNORD12C
ZODIACSNORD12C
Ontologies - Pathways
Huge Navigator SNORD12C [HugePedia]
snp3D : Map Gene to Disease26765
BioCentury BCIQSNORD12C
ClinGenSNORD12C
Clinical trials, drugs, therapy
Protein Interactions : CTD26765
Pharm GKB GenePA34470
Clinical trialSNORD12C
Miscellaneous
canSAR (ICR)SNORD12C (select the gene name)
HarmonizomeSNORD12C
DataMed IndexSNORD12C
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD12C
EVEXSNORD12C
GoPubMedSNORD12C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:29:59 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.