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SNORD138 (small nucleolar RNA, C/D box 138)

Identity

Alias_namesMIR3607
microRNA 3607
Alias_symbol (synonym)hsa-mir-3607
Other aliasmir-3607
HGNC (Hugo) SNORD138
LocusID (NCBI) 109623460
Atlas_Id 57941
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 86620506 and ends at 86620568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD138   50420
Cards
Entrez_Gene (NCBI)SNORD138  109623460  small nucleolar RNA, C/D box 138
AliasesMIR3607; mir-3607
GeneCards (Weizmann)SNORD138
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:86620506-86620568 [Contig_View]  SNORD138 [Vega]
TCGA cBioPortalSNORD138
AceView (NCBI)SNORD138
Genatlas (Paris)SNORD138
WikiGenes109623460
SOURCE (Princeton)SNORD138
Genetics Home Reference (NIH)SNORD138
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD138  -     chr5:86620506-86620568 +  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD138  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathSNORD138 - 5q14.3 [CytoView hg19]  SNORD138 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBISNORD138 [Mapview hg19]  SNORD138 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM611168
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD138
Gene ExpressionSNORD138 [ NCBI-GEO ]   SNORD138 [ EBI - ARRAY_EXPRESS ]   SNORD138 [ SEEK ]   SNORD138 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109623460
GTEX Portal (Tissue expression)SNORD138
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD138
DMDM Disease mutations109623460
Blocks (Seattle)SNORD138
Protein Interaction databases
BioGRIDSNORD138
STRING (EMBL)SNORD138
ZODIACSNORD138
Ontologies - Pathways
Huge Navigator SNORD138 [HugePedia]
snp3D : Map Gene to Disease109623460
BioCentury BCIQSNORD138
ClinGenSNORD138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109623460
Clinical trialSNORD138
Miscellaneous
canSAR (ICR)SNORD138 (select the gene name)
DataMed IndexSNORD138
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD138
EVEXSNORD138
GoPubMedSNORD138
iHOPSNORD138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 26 18:29:52 CEST 2019

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