Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SNORD3B-1 (small nucleolar RNA, C/D box 3B-1)

Identity

Alias_namesRNU3A1
RNA, U3A1 small nucleolar, RNA, U3A1 small nucleolar
Alias_symbol (synonym)U3a
U3b1
U3b2
Other alias
HGNC (Hugo) SNORD3B-1
LocusID (NCBI) 26851
Atlas_Id 79902
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19061912 and ends at 19062128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNORD3B-1   10168
Cards
Entrez_Gene (NCBI)SNORD3B-1  26851  small nucleolar RNA, C/D box 3B-1
AliasesRNU3A1; U3a; U3b1; U3b2
GeneCards (Weizmann)SNORD3B-1
Ensembl hg19 (Hinxton)ENSG00000265185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265185 [Gene_View]  ENSG00000265185 [Sequence]  chr17:19061912-19062128 [Contig_View]  SNORD3B-1 [Vega]
ICGC DataPortalENSG00000265185
TCGA cBioPortalSNORD3B-1
AceView (NCBI)SNORD3B-1
Genatlas (Paris)SNORD3B-1
WikiGenes26851
SOURCE (Princeton)SNORD3B-1
Genetics Home Reference (NIH)SNORD3B-1
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD3B-1  -     chr17:19061912-19062128 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD3B-1  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSNORD3B-1 - 17p11.2 [CytoView hg19]  SNORD3B-1 - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000265185
Mapping of homologs : NCBISNORD3B-1 [Mapview hg19]  SNORD3B-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD3B-1
Alternative Splicing GalleryENSG00000265185
Gene ExpressionSNORD3B-1 [ NCBI-GEO ]   SNORD3B-1 [ EBI - ARRAY_EXPRESS ]   SNORD3B-1 [ SEEK ]   SNORD3B-1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD3B-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26851
GTEX Portal (Tissue expression)SNORD3B-1
Human Protein AtlasENSG00000265185-SNORD3B-1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD3B-1
DMDM Disease mutations26851
Blocks (Seattle)SNORD3B-1
Human Protein Atlas [tissue]ENSG00000265185-SNORD3B-1 [tissue]
Protein Interaction databases
FunCoupENSG00000265185
BioGRIDSNORD3B-1
STRING (EMBL)SNORD3B-1
ZODIACSNORD3B-1
Ontologies - Pathways
Huge Navigator SNORD3B-1 [HugePedia]
snp3D : Map Gene to Disease26851
BioCentury BCIQSNORD3B-1
ClinGenSNORD3B-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26851
Chemical/Pharm GKB GenePA162404298
Clinical trialSNORD3B-1
Miscellaneous
canSAR (ICR)SNORD3B-1 (select the gene name)
DataMed IndexSNORD3B-1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD3B-1
EVEXSNORD3B-1
GoPubMedSNORD3B-1
iHOPSNORD3B-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:07:46 CEST 2019
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