Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD96A (small nucleolar RNA, C/D box 96A)

Identity

Alias_symbol (synonym)U96a
Other aliasU96A
HGNC (Hugo) SNORD96A
LocusID (NCBI) 619571
Atlas_Id 74020
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181241818 and ends at 181241889 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNORD96A   32758
Cards
Entrez_Gene (NCBI)SNORD96A  619571  small nucleolar RNA, C/D box 96A
AliasesU96A
GeneCards (Weizmann)SNORD96A
Ensembl hg19 (Hinxton)ENSG00000272296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272296 [Gene_View]  ENSG00000272296 [Sequence]  chr5:181241818-181241889 [Contig_View]  SNORD96A [Vega]
ICGC DataPortalENSG00000272296
TCGA cBioPortalSNORD96A
AceView (NCBI)SNORD96A
Genatlas (Paris)SNORD96A
WikiGenes619571
SOURCE (Princeton)SNORD96A
Genetics Home Reference (NIH)SNORD96A
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD96A  -     chr5:181241818-181241889 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD96A  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathSNORD96A - 5q35.3 [CytoView hg19]  SNORD96A - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000272296
Mapping of homologs : NCBISNORD96A [Mapview hg19]  SNORD96A [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD96A
Alternative Splicing GalleryENSG00000272296
Gene ExpressionSNORD96A [ NCBI-GEO ]   SNORD96A [ EBI - ARRAY_EXPRESS ]   SNORD96A [ SEEK ]   SNORD96A [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD96A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)619571
GTEX Portal (Tissue expression)SNORD96A
Human Protein AtlasENSG00000272296-SNORD96A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD96A
DMDM Disease mutations619571
Blocks (Seattle)SNORD96A
Human Protein Atlas [tissue]ENSG00000272296-SNORD96A [tissue]
Protein Interaction databases
FunCoupENSG00000272296
BioGRIDSNORD96A
STRING (EMBL)SNORD96A
ZODIACSNORD96A
Ontologies - Pathways
Huge Navigator SNORD96A [HugePedia]
snp3D : Map Gene to Disease619571
BioCentury BCIQSNORD96A
ClinGenSNORD96A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619571
Chemical/Pharm GKB GenePA145007743
Clinical trialSNORD96A
Miscellaneous
canSAR (ICR)SNORD96A (select the gene name)
HarmonizomeSNORD96A
DataMed IndexSNORD96A
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD96A
EVEXSNORD96A
GoPubMedSNORD96A
iHOPSNORD96A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 20:31:41 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.