SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)

2014-11-01  

Identity

HGNC
LOCATION
19q13.32
LOCUSID
ALIAS
SMD2,SNRPD1,Sm-D2
FUSION GENES

Other Information

Locus ID:

NCBI: 6633
MIM: 601061
HGNC: 11159
Ensembl: ENSG00000125743

Variants:

dbSNP: 6633
ClinVar: 6633
TCGA: ENSG00000125743
COSMIC: SNRPD2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000125743ENST00000342669P62316
ENSG00000125743ENST00000391932P62316
ENSG00000125743ENST00000585392K7EJB5
ENSG00000125743ENST00000587367P62316
ENSG00000125743ENST00000588301P62316
ENSG00000125743ENST00000588599P62316
ENSG00000125743ENST00000590212K7ERG4

Expression (GTEx)

0
50
100
150
200
250
300
350

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, U1-snRNPKEGGhsa_M00351
Spliceosome, U2-snRNPKEGGhsa_M00352
Spliceosome, 35S U5-snRNPKEGGhsa_M00355
Spliceosome, U4/U6.U5 tri-snRNPKEGGhsa_M00354
Sm core complexKEGGhsa_M00398
Spliceosome, U1-snRNPKEGGM00351
Spliceosome, U2-snRNPKEGGM00352
Spliceosome, U4/U6.U5 tri-snRNPKEGGM00354
Spliceosome, 35S U5-snRNPKEGGM00355
Sm core complexKEGGM00398
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163
mRNA Splicing - Minor PathwayREACTOMER-HSA-72165
Metabolism of non-coding RNAREACTOMER-HSA-194441
snRNP AssemblyREACTOMER-HSA-191859

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
311071492019Nuclear retention element recruits U1 snRNP components to restrain spliced lncRNAs in the nucleus.2

Citation

Dessen P

SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74037/snrpd2