SOX13 (SRY-box transcription factor 13)

2021-06-01 Affiliation

Identity

HGNC

SOX13

LOCATION

1q32.1

LOCUSID

9580

ALIAS

ICA12,Sox-13

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 9580
MIM: 604748
HGNC: 11192
Ensembl: ENSG00000143842

Variants:

dbSNP: 9580
ClinVar: 9580
TCGA: ENSG00000143842
COSMIC: SOX13

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000143842	ENST00000367204	Q9UN79
ENSG00000143842	ENST00000480326	H0YDQ5
ENSG00000143842	ENST00000525442	E9PKD6
ENSG00000143842	ENST00000528591	E9PPW0
ENSG00000143842	ENST00000618875	Q9UN79

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Signal Transduction	REACTOME	R-HSA-162582
Signaling by Wnt	REACTOME	R-HSA-195721
TCF dependent signaling in response to WNT	REACTOME	R-HSA-201681
Deactivation of the beta-catenin transactivating complex	REACTOME	R-HSA-3769402

References

Pubmed ID	Year	Title	Citations
19536175	2009	Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study.	30
20028982	2010	Interaction between Hhex and SOX13 modulates Wnt/TCF activity.	10
31353958	2019	SOX13 dependent PAX8 expression promotes the proliferation of gastric carcinoma cells.	2

Citation

Dessen P

SOX13 (SRY-box transcription factor 13)

Atlas Genet Cytogenet Oncol Haematol. 2021-06-01

Online version: http://atlasgeneticsoncology.org/gene/58251/sox13