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SP9 (Sp9 transcription factor)

Identity

Alias_namesSp9 transcription factor homolog (mouse)
Alias_symbol (synonym)ZNF990
Other alias
HGNC (Hugo) SP9
LocusID (NCBI) 100131390
Atlas_Id 74092
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 174335093 and ends at 174337540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP9   30690
Cards
Entrez_Gene (NCBI)SP9  100131390  Sp9 transcription factor
AliasesZNF990
GeneCards (Weizmann)SP9
Ensembl hg19 (Hinxton)ENSG00000217236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000217236 [Gene_View]  ENSG00000217236 [Sequence]  chr2:174335093-174337540 [Contig_View]  SP9 [Vega]
ICGC DataPortalENSG00000217236
TCGA cBioPortalSP9
AceView (NCBI)SP9
Genatlas (Paris)SP9
WikiGenes100131390
SOURCE (Princeton)SP9
Genetics Home Reference (NIH)SP9
Genomic and cartography
GoldenPath hg38 (UCSC)SP9  -     chr2:174335093-174337540 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SP9  -     2q31.1   [Description]    (hg19-Feb_2009)
GoldenPathSP9 - 2q31.1 [CytoView hg19]  SP9 - 2q31.1 [CytoView hg38]
ImmunoBaseENSG00000217236
Mapping of homologs : NCBISP9 [Mapview hg19]  SP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP9
Alternative Splicing GalleryENSG00000217236
Gene ExpressionSP9 [ NCBI-GEO ]   SP9 [ EBI - ARRAY_EXPRESS ]   SP9 [ SEEK ]   SP9 [ MEM ]
Gene Expression Viewer (FireBrowse)SP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131390
GTEX Portal (Tissue expression)SP9
Human Protein AtlasENSG00000217236-SP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG40
Splice isoforms : SwissVarP0CG40
PhosPhoSitePlusP0CG40
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP9
DMDM Disease mutations100131390
Blocks (Seattle)SP9
SuperfamilyP0CG40
Human Protein Atlas [tissue]ENSG00000217236-SP9 [tissue]
Peptide AtlasP0CG40
IPIIPI00847594   
Protein Interaction databases
DIP (DOE-UCLA)P0CG40
IntAct (EBI)P0CG40
FunCoupENSG00000217236
BioGRIDSP9
STRING (EMBL)SP9
ZODIACSP9
Ontologies - Pathways
QuickGOP0CG40
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  embryonic limb morphogenesis  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  embryonic limb morphogenesis  metal ion binding  
NDEx NetworkSP9
Atlas of Cancer Signalling NetworkSP9
Wikipedia pathwaysSP9
Orthology - Evolution
OrthoDB100131390
GeneTree (enSembl)ENSG00000217236
Phylogenetic Trees/Animal Genes : TreeFamSP9
HOGENOMP0CG40
Homologs : HomoloGeneSP9
Homology/Alignments : Family Browser (UCSC)SP9
Gene fusions - Rearrangements
Fusion : QuiverSP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP9
dbVarSP9
ClinVarSP9
1000_GenomesSP9 
Exome Variant ServerSP9
ExAC (Exome Aggregation Consortium)ENSG00000217236
GNOMAD BrowserENSG00000217236
Varsome BrowserSP9
Genetic variants : HAPMAP100131390
Genomic Variants (DGV)SP9 [DGVbeta]
DECIPHERSP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSP9 
Mutations
ICGC Data PortalSP9 
TCGA Data PortalSP9 
Broad Tumor PortalSP9
OASIS PortalSP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSP9
Mutations and Diseases : HGMDSP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP9
DgiDB (Drug Gene Interaction Database)SP9
DoCM (Curated mutations)SP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP9 (select a term)
intoGenSP9
Cancer3DSP9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSP9
MedgenSP9
Genetic Testing Registry SP9
NextProtP0CG40 [Medical]
TSGene100131390
GENETestsSP9
Target ValidationSP9
Huge Navigator SP9 [HugePedia]
snp3D : Map Gene to Disease100131390
BioCentury BCIQSP9
ClinGenSP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131390
Chemical/Pharm GKB GenePA164726207
Clinical trialSP9
Miscellaneous
canSAR (ICR)SP9 (select the gene name)
DataMed IndexSP9
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP9
EVEXSP9
GoPubMedSP9
iHOPSP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:08:15 CEST 2019

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