SPATA20 (spermatogenesis associated 20)

2013-05-01  

Identity

HGNC
SPATA20
LOCATION
17q21.33
LOCUSID
64847
ALIAS
HEL-S-98,SSP411,Tisp78
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 64847
MIM: 613939
HGNC: 26125
Ensembl: ENSG00000006282

Variants:

dbSNP: 64847
ClinVar: 64847
TCGA: ENSG00000006282
COSMIC: SPATA20

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000006282ENST00000006658Q8TB22
ENSG00000006282ENST00000356488Q8TB22
ENSG00000006282ENST00000502911D6RC70
ENSG00000006282ENST00000503127D6R947
ENSG00000006282ENST00000504334D6R947
ENSG00000006282ENST00000505085D6RIU6
ENSG00000006282ENST00000505456D6R947
ENSG00000006282ENST00000505559D6R947
ENSG00000006282ENST00000508528H0Y9W3
ENSG00000006282ENST00000510917D6R947
ENSG00000006282ENST00000511347H0Y9M1
ENSG00000006282ENST00000511937Q8TB22
ENSG00000006282ENST00000619622Q8TB22
ENSG00000006282ENST00000634597A0A0U1RRL8

Expression (GTEx)

0
50
100
150
200
250
300
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
231188722012Comparative proteomic profiling of human bile reveals SSP411 as a novel biomarker of cholangiocarcinoma.20

Citation

Dessen P

SPATA20 (spermatogenesis associated 20)

Atlas Genet Cytogenet Oncol Haematol. 2013-05-01

Online version: http://atlasgeneticsoncology.org/gene/53327/spata20