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SPATS2 (spermatogenesis associated serine rich 2)

Identity

Alias_namesspermatogenesis associated, serine-rich 2
Alias_symbol (synonym)SPATA10
SCR59
FLJ13117
Other aliasNbla00526
P59SCR
HGNC (Hugo) SPATS2
LocusID (NCBI) 65244
Atlas_Id 74151
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49366905 and ends at 49527426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATF7 (12q13.13) / SPATS2 (12q13.12)DIP2B (12q13.12) / SPATS2 (12q13.12)SPATS2 (12q13.12) / ACTN1 (14q24.1)
SPATS2 (12q13.12) / SLTM (15q22.1)SPATS2 (12q13.12) / SPATS2 (12q13.12)DIP2B SPATS2
ATF7 SPATS2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPATS2   18650
Cards
Entrez_Gene (NCBI)SPATS2  65244  spermatogenesis associated serine rich 2
AliasesNbla00526; P59SCR; SCR59; SPATA10
GeneCards (Weizmann)SPATS2
Ensembl hg19 (Hinxton)ENSG00000123352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123352 [Gene_View]  ENSG00000123352 [Sequence]  chr12:49366905-49527426 [Contig_View]  SPATS2 [Vega]
ICGC DataPortalENSG00000123352
TCGA cBioPortalSPATS2
AceView (NCBI)SPATS2
Genatlas (Paris)SPATS2
WikiGenes65244
SOURCE (Princeton)SPATS2
Genetics Home Reference (NIH)SPATS2
Genomic and cartography
GoldenPath hg38 (UCSC)SPATS2  -     chr12:49366905-49527426 +  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATS2  -     12q13.12   [Description]    (hg19-Feb_2009)
GoldenPathSPATS2 - 12q13.12 [CytoView hg19]  SPATS2 - 12q13.12 [CytoView hg38]
ImmunoBaseENSG00000123352
Mapping of homologs : NCBISPATS2 [Mapview hg19]  SPATS2 [Mapview hg38]
OMIM611667   
Gene and transcription
Genbank (Entrez)AB075515 AK023179 AK023202 AK024678 AK095582
RefSeq transcript (Entrez)NM_001293285 NM_001293286 NM_023071
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATS2
Cluster EST : UnigeneHs.654826 [ NCBI ]
CGAP (NCI)Hs.654826
Alternative Splicing GalleryENSG00000123352
Gene ExpressionSPATS2 [ NCBI-GEO ]   SPATS2 [ EBI - ARRAY_EXPRESS ]   SPATS2 [ SEEK ]   SPATS2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65244
GTEX Portal (Tissue expression)SPATS2
Human Protein AtlasENSG00000123352-SPATS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XZ4
Splice isoforms : SwissVarQ86XZ4
PhosPhoSitePlusQ86XZ4
Domains : Interpro (EBI)DUF1387    UBA-like_sf   
Domain families : Pfam (Sanger)DUF1387 (PF07139)   
Domain families : Pfam (NCBI)pfam07139   
Conserved Domain (NCBI)SPATS2
DMDM Disease mutations65244
Blocks (Seattle)SPATS2
SuperfamilyQ86XZ4
Human Protein Atlas [tissue]ENSG00000123352-SPATS2 [tissue]
Peptide AtlasQ86XZ4
HPRD15434
IPIIPI00329345   IPI01021626   IPI01021498   IPI01021330   IPI01022433   IPI01022145   IPI01022935   IPI01022774   IPI01022655   IPI01022478   IPI01021147   IPI01020874   IPI01020726   IPI01021649   IPI00872549   
Protein Interaction databases
DIP (DOE-UCLA)Q86XZ4
IntAct (EBI)Q86XZ4
FunCoupENSG00000123352
BioGRIDSPATS2
STRING (EMBL)SPATS2
ZODIACSPATS2
Ontologies - Pathways
QuickGOQ86XZ4
Ontology : AmiGORNA binding  cytoplasm  cytosol  
Ontology : EGO-EBIRNA binding  cytoplasm  cytosol  
NDEx NetworkSPATS2
Atlas of Cancer Signalling NetworkSPATS2
Wikipedia pathwaysSPATS2
Orthology - Evolution
OrthoDB65244
GeneTree (enSembl)ENSG00000123352
Phylogenetic Trees/Animal Genes : TreeFamSPATS2
HOGENOMQ86XZ4
Homologs : HomoloGeneSPATS2
Homology/Alignments : Family Browser (UCSC)SPATS2
Gene fusions - Rearrangements
Fusion PortalDIP2B SPATS2
Fusion PortalATF7 SPATS2
Fusion : QuiverSPATS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATS2
dbVarSPATS2
ClinVarSPATS2
1000_GenomesSPATS2 
Exome Variant ServerSPATS2
ExAC (Exome Aggregation Consortium)ENSG00000123352
GNOMAD BrowserENSG00000123352
Varsome BrowserSPATS2
Genetic variants : HAPMAP65244
Genomic Variants (DGV)SPATS2 [DGVbeta]
DECIPHERSPATS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATS2 
Mutations
ICGC Data PortalSPATS2 
TCGA Data PortalSPATS2 
Broad Tumor PortalSPATS2
OASIS PortalSPATS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATS2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATS2
Mutations and Diseases : HGMDSPATS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATS2
DgiDB (Drug Gene Interaction Database)SPATS2
DoCM (Curated mutations)SPATS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATS2 (select a term)
intoGenSPATS2
Cancer3DSPATS2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611667   
Orphanet
DisGeNETSPATS2
MedgenSPATS2
Genetic Testing Registry SPATS2
NextProtQ86XZ4 [Medical]
TSGene65244
GENETestsSPATS2
Target ValidationSPATS2
Huge Navigator SPATS2 [HugePedia]
snp3D : Map Gene to Disease65244
BioCentury BCIQSPATS2
ClinGenSPATS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65244
Chemical/Pharm GKB GenePA134871579
Clinical trialSPATS2
Miscellaneous
canSAR (ICR)SPATS2 (select the gene name)
DataMed IndexSPATS2
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATS2
EVEXSPATS2
GoPubMedSPATS2
iHOPSPATS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:08:26 CEST 2019
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