Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SPDYE1 (speedy/RINGO cell cycle regulator family member E1)

Identity

Alias (NCBI)Ringo1
SPDYB2L2
SPDYE
WBSCR19
HGNC (Hugo) SPDYE1
HGNC Alias symbRingo1
SPDYE
HGNC Alias nameSpeedy E
HGNC Previous nameWBSCR19
HGNC Previous nameWilliams Beuren syndrome chromosome region 19
 speedy homolog E1 (Xenopus laevis)
LocusID (NCBI) 285955
Atlas_Id 74157
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44000890 and ends at 44010124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPDYE1   16408
Cards
Entrez_Gene (NCBI)SPDYE1  285955  speedy/RINGO cell cycle regulator family member E1
AliasesRingo1; SPDYB2L2; SPDYE; WBSCR19
GeneCards (Weizmann)SPDYE1
Ensembl hg19 (Hinxton)ENSG00000136206 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136206 [Gene_View]  ENSG00000136206 [Sequence]  chr7:44000890-44010124 [Contig_View]  SPDYE1 [Vega]
ICGC DataPortalENSG00000136206
TCGA cBioPortalSPDYE1
AceView (NCBI)SPDYE1
Genatlas (Paris)SPDYE1
WikiGenes285955
SOURCE (Princeton)SPDYE1
Genetics Home Reference (NIH)SPDYE1
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE1  -     chr7:44000890-44010124 +  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE1  -     7p13   [Description]    (hg19-Feb_2009)
GoldenPathSPDYE1 - 7p13 [CytoView hg19]  SPDYE1 - 7p13 [CytoView hg38]
ImmunoBaseENSG00000136206
genome Data Viewer NCBISPDYE1 [Mapview hg19]  
OMIM617623   
Gene and transcription
Genbank (Entrez)AF412027 AL137266
RefSeq transcript (Entrez)NM_175064
RefSeq genomic (Entrez)NC_000007 NT_187561
Consensus coding sequences : CCDS (NCBI)SPDYE1
Alternative Splicing GalleryENSG00000136206
Gene ExpressionSPDYE1 [ NCBI-GEO ]   SPDYE1 [ EBI - ARRAY_EXPRESS ]   SPDYE1 [ SEEK ]   SPDYE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE1 [ Firebrowse - Broad ]
GenevisibleExpression of SPDYE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285955
GTEX Portal (Tissue expression)SPDYE1
Human Protein AtlasENSG00000136206-SPDYE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFV5
Splice isoforms : SwissVarQ8NFV5
PhosPhoSitePlusQ8NFV5
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE1
DMDM Disease mutations285955
Blocks (Seattle)SPDYE1
SuperfamilyQ8NFV5
Human Protein Atlas [tissue]ENSG00000136206-SPDYE1 [tissue]
Peptide AtlasQ8NFV5
HPRD11677
IPIIPI00788297   IPI00793871   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFV5
IntAct (EBI)Q8NFV5
FunCoupENSG00000136206
BioGRIDSPDYE1
STRING (EMBL)SPDYE1
ZODIACSPDYE1
Ontologies - Pathways
QuickGOQ8NFV5
Ontology : AmiGOprotein kinase binding  
Ontology : EGO-EBIprotein kinase binding  
NDEx NetworkSPDYE1
Atlas of Cancer Signalling NetworkSPDYE1
Wikipedia pathwaysSPDYE1
Orthology - Evolution
OrthoDB285955
GeneTree (enSembl)ENSG00000136206
Phylogenetic Trees/Animal Genes : TreeFamSPDYE1
HOGENOMQ8NFV5
Homologs : HomoloGeneSPDYE1
Homology/Alignments : Family Browser (UCSC)SPDYE1
Gene fusions - Rearrangements
Fusion : QuiverSPDYE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE1
dbVarSPDYE1
ClinVarSPDYE1
1000_GenomesSPDYE1 
Exome Variant ServerSPDYE1
GNOMAD BrowserENSG00000136206
Varsome BrowserSPDYE1
Genetic variants : HAPMAP285955
Genomic Variants (DGV)SPDYE1 [DGVbeta]
DECIPHERSPDYE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE1 
Mutations
ICGC Data PortalSPDYE1 
TCGA Data PortalSPDYE1 
Broad Tumor PortalSPDYE1
OASIS PortalSPDYE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPDYE1
Mutations and Diseases : HGMDSPDYE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE1
DgiDB (Drug Gene Interaction Database)SPDYE1
DoCM (Curated mutations)SPDYE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE1 (select a term)
intoGenSPDYE1
Cancer3DSPDYE1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617623   
Orphanet
DisGeNETSPDYE1
MedgenSPDYE1
Genetic Testing Registry SPDYE1
NextProtQ8NFV5 [Medical]
TSGene285955
GENETestsSPDYE1
Target ValidationSPDYE1
Huge Navigator SPDYE1 [HugePedia]
snp3D : Map Gene to Disease285955
BioCentury BCIQSPDYE1
ClinGenSPDYE1
Clinical trials, drugs, therapy
Protein Interactions : CTD285955
Pharm GKB GenePA38135
Clinical trialSPDYE1
Miscellaneous
canSAR (ICR)SPDYE1 (select the gene name)
HarmonizomeSPDYE1
DataMed IndexSPDYE1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE1
EVEXSPDYE1
GoPubMedSPDYE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:31:03 CEST 2020
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