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SPG11 (SPG11 vesicle trafficking associated, spatacsin)

Identity

Alias (NCBI)ALS5
CMT2X
KIAA1840
HGNC (Hugo) SPG11
HGNC Alias symbFLJ21439
HGNC Alias namespatacsin
HGNC Previous nameKIAA1840
 ALS5
HGNC Previous nameKIAA1840
 spastic paraplegia 11 (autosomal recessive)
 amyotrophic lateral sclerosis 5
LocusID (NCBI) 80208
Atlas_Id 54663
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 44562696 and ends at 44663662 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPG11 (15q21.1) / AKAP13 (15q25.3)SPG11 (15q21.1) / CAMK2G (10q22.2)SPG11 (15q21.1) / CHRM3 (1q43)
SPG11 (15q21.1) / EIF3J (15q21.1)SPG11 (15q21.1) / ISLR (15q24.1)SPG11 (15q21.1) / ITGA9 (3p22.2)
SPG11 (15q21.1) / JMJD7 (15q15.1)SPG11 (15q21.1) / SORD (15q21.1)SPG11 15q21.1 / CAMK2G 10q22.2
SPG11 15q21.1 / JMJD7 15q15.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPG11   11226
Cards
Entrez_Gene (NCBI)SPG11    SPG11 vesicle trafficking associated, spatacsin
AliasesALS5; CMT2X; KIAA1840
GeneCards (Weizmann)SPG11
Ensembl hg19 (Hinxton)ENSG00000104133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104133 [Gene_View]  ENSG00000104133 [Sequence]  chr15:44562696-44663662 [Contig_View]  SPG11 [Vega]
ICGC DataPortalENSG00000104133
TCGA cBioPortalSPG11
AceView (NCBI)SPG11
Genatlas (Paris)SPG11
SOURCE (Princeton)SPG11
Genetics Home Reference (NIH)SPG11
Genomic and cartography
GoldenPath hg38 (UCSC)SPG11  -     chr15:44562696-44663662 -  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPG11  -     15q21.1   [Description]    (hg19-Feb_2009)
GoldenPathSPG11 - 15q21.1 [CytoView hg19]  SPG11 - 15q21.1 [CytoView hg38]
ImmunoBaseENSG00000104133
genome Data Viewer NCBISPG11 [Mapview hg19]  
OMIM602099   604360   610844   616668   
Gene and transcription
Genbank (Entrez)AB058743 AB470308 AB470309 AB470310 AK025092
RefSeq transcript (Entrez)NM_001160227 NM_025137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPG11
Alternative Splicing GalleryENSG00000104133
Gene ExpressionSPG11 [ NCBI-GEO ]   SPG11 [ EBI - ARRAY_EXPRESS ]   SPG11 [ SEEK ]   SPG11 [ MEM ]
Gene Expression Viewer (FireBrowse)SPG11 [ Firebrowse - Broad ]
GenevisibleExpression of SPG11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80208
GTEX Portal (Tissue expression)SPG11
Human Protein AtlasENSG00000104133-SPG11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPG11
Blocks (Seattle)SPG11
Human Protein Atlas [tissue]ENSG00000104133-SPG11 [tissue]
HPRD07963
IPIIPI00101923   IPI01009685   IPI00384851   IPI00798078   
Protein Interaction databases
BioGRIDSPG11
STRING (EMBL)SPG11
ZODIACSPG11
Ontologies - Pathways
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPG11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:47:21 CET 2021
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